Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11033 | 3' | -54.8 | NC_002794.1 | + | 61160 | 0.67 | 0.928982 |
Target: 5'- cCGAGCGcgcgguccggaucgGCgGCUGGUcGCUCGuGCUGCc -3' miRNA: 3'- -GCUCGU--------------UG-CGACCGaCGAGC-UGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 57868 | 0.67 | 0.930537 |
Target: 5'- cCGAcGCGGCGCUGcacaGCUGCccgUCGcCUGCu -3' miRNA: 3'- -GCU-CGUUGCGAC----CGACG---AGCuGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 130457 | 0.67 | 0.930537 |
Target: 5'- uGGGCGgcgagGCGCUGGCgGCUUGcgUGCGc -3' miRNA: 3'- gCUCGU-----UGCGACCGaCGAGCugAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 123504 | 0.67 | 0.935565 |
Target: 5'- uGuGCAuCGCcgGGCUGC-CGGcCUGCAg -3' miRNA: 3'- gCuCGUuGCGa-CCGACGaGCU-GAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 119447 | 0.67 | 0.935565 |
Target: 5'- -cGGCGGCGgUGGCgGCgUCGACUuCGa -3' miRNA: 3'- gcUCGUUGCgACCGaCG-AGCUGAuGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 60319 | 0.67 | 0.93751 |
Target: 5'- uGGGCGACGUccucuacaaccUGGCgcaccgcgaccgcCUCGGCUACAa -3' miRNA: 3'- gCUCGUUGCG-----------ACCGac-----------GAGCUGAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 92421 | 0.67 | 0.940356 |
Target: 5'- cCGAGCAcgggcgaggacACGCUGGCcgUGCggGGCcGCGc -3' miRNA: 3'- -GCUCGU-----------UGCGACCG--ACGagCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 179701 | 0.67 | 0.940356 |
Target: 5'- -cGGCGACGgUGGCgacGCcggCGGCUACc -3' miRNA: 3'- gcUCGUUGCgACCGa--CGa--GCUGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 138433 | 0.66 | 0.95332 |
Target: 5'- uCGAGCcGCGgUGGCggcgGCgccUCGGcCUGCGa -3' miRNA: 3'- -GCUCGuUGCgACCGa---CG---AGCU-GAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 150941 | 0.66 | 0.95332 |
Target: 5'- --cGCGgucuGCGCUGGgUGUUCGAgauCUACGa -3' miRNA: 3'- gcuCGU----UGCGACCgACGAGCU---GAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 128089 | 0.66 | 0.95332 |
Target: 5'- cCGAGuCGGCGacgGGgaGCUCGACgggggGCu -3' miRNA: 3'- -GCUC-GUUGCga-CCgaCGAGCUGa----UGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 55276 | 0.66 | 0.95332 |
Target: 5'- gGGGCGGCGgUGGCgGCgacgagggCGGCgGCGg -3' miRNA: 3'- gCUCGUUGCgACCGaCGa-------GCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 143481 | 0.66 | 0.956805 |
Target: 5'- -uGGCAGacgauguCGCUGGCcGCggGGCUGCAg -3' miRNA: 3'- gcUCGUU-------GCGACCGaCGagCUGAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 128148 | 0.66 | 0.957181 |
Target: 5'- aGaAGCGACGCgacGGCgGCUCGcGCcGCGg -3' miRNA: 3'- gC-UCGUUGCGa--CCGaCGAGC-UGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 52796 | 0.66 | 0.957181 |
Target: 5'- uCGAGCcgcucgucgGACGCcGGCaGCUCGucCUGCc -3' miRNA: 3'- -GCUCG---------UUGCGaCCGaCGAGCu-GAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 37881 | 0.66 | 0.957181 |
Target: 5'- uCGGGCGGCGggGGCggugGCggCGGCaGCGg -3' miRNA: 3'- -GCUCGUUGCgaCCGa---CGa-GCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 143377 | 0.66 | 0.962212 |
Target: 5'- gGGGCAGauaggagagggucaGCU-GCUGCUCGACcgGCGc -3' miRNA: 3'- gCUCGUUg-------------CGAcCGACGAGCUGa-UGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 57328 | 0.66 | 0.96357 |
Target: 5'- --uGCAGCGCguccugcugcaGCUGCUCGACgcCAg -3' miRNA: 3'- gcuCGUUGCGac---------CGACGAGCUGauGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 44243 | 0.66 | 0.964236 |
Target: 5'- cCGGGCGGCucgguGCcgGGCgGCUCGGCcGCc -3' miRNA: 3'- -GCUCGUUG-----CGa-CCGaCGAGCUGaUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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