miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 3' -54.8 NC_002794.1 + 124528 0.71 0.745642
Target:  5'- gGAGCcgccGACGCUGGC-GCUgCGGCUGa- -3'
miRNA:   3'- gCUCG----UUGCGACCGaCGA-GCUGAUgu -5'
11033 3' -54.8 NC_002794.1 + 127363 0.67 0.919765
Target:  5'- -cGGCGGCGC-GGCcGCUCGugUcgGCGg -3'
miRNA:   3'- gcUCGUUGCGaCCGaCGAGCugA--UGU- -5'
11033 3' -54.8 NC_002794.1 + 128089 0.66 0.95332
Target:  5'- cCGAGuCGGCGacgGGgaGCUCGACgggggGCu -3'
miRNA:   3'- -GCUC-GUUGCga-CCgaCGAGCUGa----UGu -5'
11033 3' -54.8 NC_002794.1 + 128148 0.66 0.957181
Target:  5'- aGaAGCGACGCgacGGCgGCUCGcGCcGCGg -3'
miRNA:   3'- gC-UCGUUGCGa--CCGaCGAGC-UGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 130457 0.67 0.930537
Target:  5'- uGGGCGgcgagGCGCUGGCgGCUUGcgUGCGc -3'
miRNA:   3'- gCUCGU-----UGCGACCGaCGAGCugAUGU- -5'
11033 3' -54.8 NC_002794.1 + 131029 0.67 0.92527
Target:  5'- uCGuGCGGCGCggccGGCUGCcgccgauguucgUCGACgACGa -3'
miRNA:   3'- -GCuCGUUGCGa---CCGACG------------AGCUGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 137990 0.68 0.901828
Target:  5'- --cGCAGCGCUGGUgcaGCUgGGCgcGCAg -3'
miRNA:   3'- gcuCGUUGCGACCGa--CGAgCUGa-UGU- -5'
11033 3' -54.8 NC_002794.1 + 138433 0.66 0.95332
Target:  5'- uCGAGCcGCGgUGGCggcgGCgccUCGGcCUGCGa -3'
miRNA:   3'- -GCUCGuUGCgACCGa---CG---AGCU-GAUGU- -5'
11033 3' -54.8 NC_002794.1 + 143377 0.66 0.962212
Target:  5'- gGGGCAGauaggagagggucaGCU-GCUGCUCGACcgGCGc -3'
miRNA:   3'- gCUCGUUg-------------CGAcCGACGAGCUGa-UGU- -5'
11033 3' -54.8 NC_002794.1 + 143481 0.66 0.956805
Target:  5'- -uGGCAGacgauguCGCUGGCcGCggGGCUGCAg -3'
miRNA:   3'- gcUCGUU-------GCGACCGaCGagCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 147257 0.67 0.92527
Target:  5'- cCGGGCAGaCGCUcGaGCUGCcguggccgucCGGCUGCAc -3'
miRNA:   3'- -GCUCGUU-GCGA-C-CGACGa---------GCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 147413 0.69 0.87468
Target:  5'- aCGAGCGcuACGCguacccGCUGCUgcuggaCGGCUACGg -3'
miRNA:   3'- -GCUCGU--UGCGac----CGACGA------GCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 148630 0.68 0.908042
Target:  5'- uGGGUcuccgauCGCggcGGCgUGCUCGGCUACGc -3'
miRNA:   3'- gCUCGuu-----GCGa--CCG-ACGAGCUGAUGU- -5'
11033 3' -54.8 NC_002794.1 + 149668 0.67 0.92527
Target:  5'- cCGAGCGgggGCGCgucGC-GCUCGACUGg- -3'
miRNA:   3'- -GCUCGU---UGCGac-CGaCGAGCUGAUgu -5'
11033 3' -54.8 NC_002794.1 + 150210 0.72 0.686135
Target:  5'- aCGAGCGGCuGCUGccgaGCUGCgugCGACgGCAg -3'
miRNA:   3'- -GCUCGUUG-CGAC----CGACGa--GCUGaUGU- -5'
11033 3' -54.8 NC_002794.1 + 150941 0.66 0.95332
Target:  5'- --cGCGgucuGCGCUGGgUGUUCGAgauCUACGa -3'
miRNA:   3'- gcuCGU----UGCGACCgACGAGCU---GAUGU- -5'
11033 3' -54.8 NC_002794.1 + 157650 0.71 0.745642
Target:  5'- cCGAGCAcgaucccgacGCGCUGGCggcuugggccGCUUGGCgUGCAc -3'
miRNA:   3'- -GCUCGU----------UGCGACCGa---------CGAGCUG-AUGU- -5'
11033 3' -54.8 NC_002794.1 + 179701 0.67 0.940356
Target:  5'- -cGGCGACGgUGGCgacGCcggCGGCUACc -3'
miRNA:   3'- gcUCGUUGCgACCGa--CGa--GCUGAUGu -5'
11033 3' -54.8 NC_002794.1 + 184504 0.68 0.895381
Target:  5'- cCGGGCGGCGCgGGCcccGCgcgCGGCgcggGCGa -3'
miRNA:   3'- -GCUCGUUGCGaCCGa--CGa--GCUGa---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.