Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11033 | 3' | -54.8 | NC_002794.1 | + | 119447 | 0.67 | 0.935565 |
Target: 5'- -cGGCGGCGgUGGCgGCgUCGACUuCGa -3' miRNA: 3'- gcUCGUUGCgACCGaCG-AGCUGAuGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 92721 | 0.71 | 0.77418 |
Target: 5'- uCGAGCcugucGCGCUGGCUGCU--GCaGCAc -3' miRNA: 3'- -GCUCGu----UGCGACCGACGAgcUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 92421 | 0.67 | 0.940356 |
Target: 5'- cCGAGCAcgggcgaggacACGCUGGCcgUGCggGGCcGCGc -3' miRNA: 3'- -GCUCGU-----------UGCGACCG--ACGagCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 90673 | 0.71 | 0.755266 |
Target: 5'- gGGGCcggcCGCgUGGCUGUUCGugUGCc -3' miRNA: 3'- gCUCGuu--GCG-ACCGACGAGCugAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 61160 | 0.67 | 0.928982 |
Target: 5'- cCGAGCGcgcgguccggaucgGCgGCUGGUcGCUCGuGCUGCc -3' miRNA: 3'- -GCUCGU--------------UG-CGACCGaCGAGC-UGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 60319 | 0.67 | 0.93751 |
Target: 5'- uGGGCGACGUccucuacaaccUGGCgcaccgcgaccgcCUCGGCUACAa -3' miRNA: 3'- gCUCGUUGCG-----------ACCGac-----------GAGCUGAUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 57868 | 0.67 | 0.930537 |
Target: 5'- cCGAcGCGGCGCUGcacaGCUGCccgUCGcCUGCu -3' miRNA: 3'- -GCU-CGUUGCGAC----CGACG---AGCuGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 57328 | 0.66 | 0.96357 |
Target: 5'- --uGCAGCGCguccugcugcaGCUGCUCGACgcCAg -3' miRNA: 3'- gcuCGUUGCGac---------CGACGAGCUGauGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 55276 | 0.66 | 0.95332 |
Target: 5'- gGGGCGGCGgUGGCgGCgacgagggCGGCgGCGg -3' miRNA: 3'- gCUCGUUGCgACCGaCGa-------GCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 52796 | 0.66 | 0.957181 |
Target: 5'- uCGAGCcgcucgucgGACGCcGGCaGCUCGucCUGCc -3' miRNA: 3'- -GCUCG---------UUGCGaCCGaCGAGCu-GAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 44243 | 0.66 | 0.964236 |
Target: 5'- cCGGGCGGCucgguGCcgGGCgGCUCGGCcGCc -3' miRNA: 3'- -GCUCGUUG-----CGa-CCGaCGAGCUGaUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 38637 | 0.67 | 0.92527 |
Target: 5'- cCGGuGCGGCGCgacGGagGCUCGACUAUu -3' miRNA: 3'- -GCU-CGUUGCGa--CCgaCGAGCUGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 38162 | 0.67 | 0.92527 |
Target: 5'- gCGAGCAG-GC-GGCUgcGCUCGGCgACGa -3' miRNA: 3'- -GCUCGUUgCGaCCGA--CGAGCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 37881 | 0.66 | 0.957181 |
Target: 5'- uCGGGCGGCGggGGCggugGCggCGGCaGCGg -3' miRNA: 3'- -GCUCGUUGCgaCCGa---CGa-GCUGaUGU- -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 32252 | 0.7 | 0.835936 |
Target: 5'- --uGCAGCuGCUGGC-GCUCGACgGCc -3' miRNA: 3'- gcuCGUUG-CGACCGaCGAGCUGaUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 30826 | 0.69 | 0.859791 |
Target: 5'- uCGAaCGACGuCUGGCUGgUCGGCggagGCu -3' miRNA: 3'- -GCUcGUUGC-GACCGACgAGCUGa---UGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 15274 | 0.68 | 0.901828 |
Target: 5'- gCGAGCcGCGC-GGCUcccuccgcGCgagCGACUACu -3' miRNA: 3'- -GCUCGuUGCGaCCGA--------CGa--GCUGAUGu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 15005 | 0.7 | 0.792588 |
Target: 5'- uCGGGCggUcucgGCUGGCUGCUCGuCg--- -3' miRNA: 3'- -GCUCGuuG----CGACCGACGAGCuGaugu -5' |
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11033 | 3' | -54.8 | NC_002794.1 | + | 14514 | 0.67 | 0.92527 |
Target: 5'- --cGCGGCGCucgUGGCgccGCUCGGCcACGg -3' miRNA: 3'- gcuCGUUGCG---ACCGa--CGAGCUGaUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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