miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 179237 0.66 0.917973
Target:  5'- uGCaACAGGU-CGGCGUcGGCGagaCCGcCGCc -3'
miRNA:   3'- -CGaUGUUCAcGUCGCA-CCGC---GGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 167267 0.66 0.917973
Target:  5'- uCUGguGGUucGUAGCGuUGGCGaCGUGCg -3'
miRNA:   3'- cGAUguUCA--CGUCGC-ACCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 92424 0.66 0.917973
Target:  5'- aGCacggGCGAGgacacgcugGCcGUGcGGgGCCGCGCg -3'
miRNA:   3'- -CGa---UGUUCa--------CGuCGCaCCgCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 91319 0.66 0.917973
Target:  5'- uCUACuacGUGUucacGGCGcugggucaGGCGCUGCGCu -3'
miRNA:   3'- cGAUGuu-CACG----UCGCa-------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 185119 0.66 0.917973
Target:  5'- --aGCAuGUGCA-CGaccaggcGGCGCCGCGUc -3'
miRNA:   3'- cgaUGUuCACGUcGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 11335 0.66 0.917973
Target:  5'- --aACGAGacGCAgGCGaucuccGGCGUCGCGCu -3'
miRNA:   3'- cgaUGUUCa-CGU-CGCa-----CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 191510 0.66 0.917973
Target:  5'- --gAgAGGUGcCAGCGccgGGCGucggcCCGCGCc -3'
miRNA:   3'- cgaUgUUCAC-GUCGCa--CCGC-----GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 37272 0.66 0.917973
Target:  5'- --gGCGGGcGC-GCG-GGCGCgGCGUa -3'
miRNA:   3'- cgaUGUUCaCGuCGCaCCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 87818 0.66 0.917973
Target:  5'- cCUACuAGcGC-GCGUGcGCGuauCCGCGCg -3'
miRNA:   3'- cGAUGuUCaCGuCGCAC-CGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 195220 0.66 0.917973
Target:  5'- aGCUGCGGcaGCAGCcc-GCGCgGCGUc -3'
miRNA:   3'- -CGAUGUUcaCGUCGcacCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 120079 0.66 0.916287
Target:  5'- cGCgGC-GGUgGCGGCGacgaccgugccgagcGCGCCGCGCg -3'
miRNA:   3'- -CGaUGuUCA-CGUCGCac-------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 111616 0.66 0.91458
Target:  5'- gGCcgGCGGGgccGCcGCGgccgccgccggucgGGCGCCGCGg -3'
miRNA:   3'- -CGa-UGUUCa--CGuCGCa-------------CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 47938 0.66 0.912273
Target:  5'- --------cGCAGaucGGCGCCGCGCg -3'
miRNA:   3'- cgauguucaCGUCgcaCCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 181742 0.66 0.908743
Target:  5'- cGC-GCGAGcgGcCGGCcagcccgcugacgccGaUGGCGCCGCGCc -3'
miRNA:   3'- -CGaUGUUCa-C-GUCG---------------C-ACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184419 0.66 0.906345
Target:  5'- cGCUcaccgGCAGGUGCAGacuGUacaucugaGcGCGCCGCuGCc -3'
miRNA:   3'- -CGA-----UGUUCACGUCg--CA--------C-CGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 144970 0.66 0.906345
Target:  5'- gGCgccuCGacGGUGUcGCGaccGGCGCCGgGCg -3'
miRNA:   3'- -CGau--GU--UCACGuCGCa--CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 53054 0.66 0.906345
Target:  5'- gGCUccaGCGuagGCAGCGccGCGCCGCcaGCu -3'
miRNA:   3'- -CGA---UGUucaCGUCGCacCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 70070 0.66 0.905739
Target:  5'- gGCcGCAGccGCAGCaaGGCgacgcagGCCGCGCa -3'
miRNA:   3'- -CGaUGUUcaCGUCGcaCCG-------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 61871 0.66 0.900192
Target:  5'- cGCcGCGc--GCcGuCGUcGGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUucaCGuC-GCA-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 67011 0.66 0.900192
Target:  5'- --gACGAGUccggcgGCGGCGgccGGCucccGCCGCGUc -3'
miRNA:   3'- cgaUGUUCA------CGUCGCa--CCG----CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.