Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 37272 | 0.66 | 0.917973 |
Target: 5'- --gGCGGGcGC-GCG-GGCGCgGCGUa -3' miRNA: 3'- cgaUGUUCaCGuCGCaCCGCGgCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 191510 | 0.66 | 0.917973 |
Target: 5'- --gAgAGGUGcCAGCGccgGGCGucggcCCGCGCc -3' miRNA: 3'- cgaUgUUCAC-GUCGCa--CCGC-----GGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 11335 | 0.66 | 0.917973 |
Target: 5'- --aACGAGacGCAgGCGaucuccGGCGUCGCGCu -3' miRNA: 3'- cgaUGUUCa-CGU-CGCa-----CCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 185119 | 0.66 | 0.917973 |
Target: 5'- --aGCAuGUGCA-CGaccaggcGGCGCCGCGUc -3' miRNA: 3'- cgaUGUuCACGUcGCa------CCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 91319 | 0.66 | 0.917973 |
Target: 5'- uCUACuacGUGUucacGGCGcugggucaGGCGCUGCGCu -3' miRNA: 3'- cGAUGuu-CACG----UCGCa-------CCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 181742 | 0.66 | 0.908743 |
Target: 5'- cGC-GCGAGcgGcCGGCcagcccgcugacgccGaUGGCGCCGCGCc -3' miRNA: 3'- -CGaUGUUCa-C-GUCG---------------C-ACCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 47938 | 0.66 | 0.912273 |
Target: 5'- --------cGCAGaucGGCGCCGCGCg -3' miRNA: 3'- cgauguucaCGUCgcaCCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 120079 | 0.66 | 0.916287 |
Target: 5'- cGCgGC-GGUgGCGGCGacgaccgugccgagcGCGCCGCGCg -3' miRNA: 3'- -CGaUGuUCA-CGUCGCac-------------CGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 111616 | 0.66 | 0.91458 |
Target: 5'- gGCcgGCGGGgccGCcGCGgccgccgccggucgGGCGCCGCGg -3' miRNA: 3'- -CGa-UGUUCa--CGuCGCa-------------CCGCGGCGCg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 167267 | 0.66 | 0.917973 |
Target: 5'- uCUGguGGUucGUAGCGuUGGCGaCGUGCg -3' miRNA: 3'- cGAUguUCA--CGUCGC-ACCGCgGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 92424 | 0.66 | 0.917973 |
Target: 5'- aGCacggGCGAGgacacgcugGCcGUGcGGgGCCGCGCg -3' miRNA: 3'- -CGa---UGUUCa--------CGuCGCaCCgCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 12206 | 0.67 | 0.866159 |
Target: 5'- cGCUcggACGugccgGCGGCGUcggcGGCGCCG-GCg -3' miRNA: 3'- -CGA---UGUuca--CGUCGCA----CCGCGGCgCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 37730 | 0.67 | 0.866159 |
Target: 5'- --cGCGAGcgGCGGCGccgccGGCGgCgGCGCg -3' miRNA: 3'- cgaUGUUCa-CGUCGCa----CCGC-GgCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 137975 | 0.67 | 0.871959 |
Target: 5'- cCUGgGAGUugucgccGCAGCGcUGGUGCagcugggCGCGCa -3' miRNA: 3'- cGAUgUUCA-------CGUCGC-ACCGCG-------GCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 106237 | 0.67 | 0.869076 |
Target: 5'- cGCU-CGGGUcGCagaccgccgcgaaccGGCGa-GCGCCGCGCg -3' miRNA: 3'- -CGAuGUUCA-CG---------------UCGCacCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 99690 | 0.67 | 0.866159 |
Target: 5'- --cAUAAcUGC-GCGcUGGCGCCGCGg -3' miRNA: 3'- cgaUGUUcACGuCGC-ACCGCGGCGCg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 123587 | 0.67 | 0.876223 |
Target: 5'- cGCcGCccGUGCAGCGUcccGgaacgccugugggacGCGCUGCGCg -3' miRNA: 3'- -CGaUGuuCACGUCGCA---C---------------CGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 90103 | 0.67 | 0.873389 |
Target: 5'- uCUGCGcc-GCGGUG-GGCGCCGUGa -3' miRNA: 3'- cGAUGUucaCGUCGCaCCGCGGCGCg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 117982 | 0.67 | 0.880411 |
Target: 5'- aGCUGguGGUaCAGCaggGGCuGCCGCGg -3' miRNA: 3'- -CGAUguUCAcGUCGca-CCG-CGGCGCg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 127343 | 0.67 | 0.866159 |
Target: 5'- cGCUGcCGAGacgcucGCGGCGgcGGCGCgGcCGCu -3' miRNA: 3'- -CGAU-GUUCa-----CGUCGCa-CCGCGgC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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