miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 71785 0.67 0.843283
Target:  5'- cGCgcgGCGAGUcGCcccccGGCG-GGCGCgGCGa -3'
miRNA:   3'- -CGa--UGUUCA-CG-----UCGCaCCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 182191 0.67 0.843283
Target:  5'- --aACGGGgccuCGGCGccGGCGUCGCGCc -3'
miRNA:   3'- cgaUGUUCac--GUCGCa-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 102603 0.67 0.841697
Target:  5'- cGCUACAAGcagcucaaccUGCcgcaccuGGCGgucauccgccggcUGGCGgCGCGCu -3'
miRNA:   3'- -CGAUGUUC----------ACG-------UCGC-------------ACCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 113370 0.67 0.858728
Target:  5'- cGgaACGGGUGCGGgccgccguCGUgcaGGCGCUGCaGCa -3'
miRNA:   3'- -CgaUGUUCACGUC--------GCA---CCGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 102150 0.67 0.858728
Target:  5'- cGCUucg---GCGGCGUGcGCGCCGgGg -3'
miRNA:   3'- -CGAuguucaCGUCGCAC-CGCGGCgCg -5'
11033 5' -57.1 NC_002794.1 + 44234 0.67 0.858728
Target:  5'- gGCUc--GGUGCcgGGCGgcucGGUGCCGgGCg -3'
miRNA:   3'- -CGAuguUCACG--UCGCa---CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 118255 0.67 0.880411
Target:  5'- gGCUGgAGGUcgGCcggGGCGgcGGCGCCgGCGUc -3'
miRNA:   3'- -CGAUgUUCA--CG---UCGCa-CCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 117982 0.67 0.880411
Target:  5'- aGCUGguGGUaCAGCaggGGCuGCCGCGg -3'
miRNA:   3'- -CGAUguUCAcGUCGca-CCG-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 90103 0.67 0.873389
Target:  5'- uCUGCGcc-GCGGUG-GGCGCCGUGa -3'
miRNA:   3'- cGAUGUucaCGUCGCaCCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 123587 0.67 0.876223
Target:  5'- cGCcGCccGUGCAGCGUcccGgaacgccugugggacGCGCUGCGCg -3'
miRNA:   3'- -CGaUGuuCACGUCGCA---C---------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 99690 0.67 0.866159
Target:  5'- --cAUAAcUGC-GCGcUGGCGCCGCGg -3'
miRNA:   3'- cgaUGUUcACGuCGC-ACCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 106237 0.67 0.869076
Target:  5'- cGCU-CGGGUcGCagaccgccgcgaaccGGCGa-GCGCCGCGCg -3'
miRNA:   3'- -CGAuGUUCA-CG---------------UCGCacCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 137975 0.67 0.871959
Target:  5'- cCUGgGAGUugucgccGCAGCGcUGGUGCagcugggCGCGCa -3'
miRNA:   3'- cGAUgUUCA-------CGUCGC-ACCGCG-------GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 37730 0.67 0.866159
Target:  5'- --cGCGAGcgGCGGCGccgccGGCGgCgGCGCg -3'
miRNA:   3'- cgaUGUUCa-CGUCGCa----CCGC-GgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 12206 0.67 0.866159
Target:  5'- cGCUcggACGugccgGCGGCGUcggcGGCGCCG-GCg -3'
miRNA:   3'- -CGA---UGUuca--CGUCGCA----CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 127343 0.67 0.866159
Target:  5'- cGCUGcCGAGacgcucGCGGCGgcGGCGCgGcCGCu -3'
miRNA:   3'- -CGAU-GUUCa-----CGUCGCa-CCGCGgC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 120032 0.67 0.85948
Target:  5'- --cGCGGGgacgucgucaugacgGCGGCgGUGGCGgCCGCGg -3'
miRNA:   3'- cgaUGUUCa--------------CGUCG-CACCGC-GGCGCg -5'
11033 5' -57.1 NC_002794.1 + 149208 0.67 0.858728
Target:  5'- aGCUAUccGgcugGCcggaAGCGaGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuuCa---CG----UCGCaCCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 84285 0.68 0.834472
Target:  5'- aGCUGCcgacgggGAGcgGCGGCGcuuccUGGCGaCCGgGCc -3'
miRNA:   3'- -CGAUG-------UUCa-CGUCGC-----ACCGC-GGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 184485 0.68 0.827929
Target:  5'- cGC-GCGGGgccccggacgcccggGCGGCGcgGGCcCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa--------------CGUCGCa-CCGcGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.