miRNA display CGI


Results 61 - 80 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 96362 0.69 0.792765
Target:  5'- cCUGgcCGAGgGCAcCGUGGCGCCGaGCg -3'
miRNA:   3'- cGAU--GUUCaCGUcGCACCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 85034 0.69 0.765527
Target:  5'- cGCU-CGGGUGCcuCG-GGC-CCGCGCu -3'
miRNA:   3'- -CGAuGUUCACGucGCaCCGcGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 121038 0.69 0.774731
Target:  5'- ----gGAGaGCGGCGcgucgGGCGCCGCGa -3'
miRNA:   3'- cgaugUUCaCGUCGCa----CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 39510 0.69 0.745838
Target:  5'- cGCUACAugaaGGUGCAGUucggcuaccaccuGgGGCuGCUGUGCg -3'
miRNA:   3'- -CGAUGU----UCACGUCG-------------CaCCG-CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 11060 0.69 0.765527
Target:  5'- cCUGCGGGUGCAGaCuUGGUacGCCGCcuGCc -3'
miRNA:   3'- cGAUGUUCACGUC-GcACCG--CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 91747 0.69 0.765527
Target:  5'- --aACAAgGUGcCGGCG-GGCGgcaCCGCGCa -3'
miRNA:   3'- cgaUGUU-CAC-GUCGCaCCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 78689 0.69 0.756209
Target:  5'- gGCcGCAuGUGCGGCcgacacGGCGCCGC-Ca -3'
miRNA:   3'- -CGaUGUuCACGUCGca----CCGCGGCGcG- -5'
11033 5' -57.1 NC_002794.1 + 123483 0.68 0.801578
Target:  5'- cGCUGCGGac-CAGCGUGGaccugugcauCGCCGgGCu -3'
miRNA:   3'- -CGAUGUUcacGUCGCACC----------GCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 156024 0.68 0.801578
Target:  5'- --cAUggGUcGCAGcCGUcGCGUCGCGCg -3'
miRNA:   3'- cgaUGuuCA-CGUC-GCAcCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 135713 0.68 0.798949
Target:  5'- cGCU-CGAGcUGCuGCGUaGcaucugcaccugccGCGCCGCGCc -3'
miRNA:   3'- -CGAuGUUC-ACGuCGCA-C--------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 53764 0.68 0.827103
Target:  5'- cGCUGCcg--GCGGCG-GGaCGCC-CGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCaCC-GCGGcGCG- -5'
11033 5' -57.1 NC_002794.1 + 58449 0.68 0.810244
Target:  5'- cGCUGCGccugGCcGCGcUGGCGCUGCa- -3'
miRNA:   3'- -CGAUGUuca-CGuCGC-ACCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 192424 0.68 0.801578
Target:  5'- cGCgACGGGUccGCGGCc-GGCGCguCGCGCg -3'
miRNA:   3'- -CGaUGUUCA--CGUCGcaCCGCG--GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 149785 0.68 0.801578
Target:  5'- gGCgUACGGGUGguGCGUGGauCUGgGUu -3'
miRNA:   3'- -CG-AUGUUCACguCGCACCgcGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 34231 0.68 0.818755
Target:  5'- aGgUGCAGGagcUGCAcGCGcGGCuGCCGcCGCa -3'
miRNA:   3'- -CgAUGUUC---ACGU-CGCaCCG-CGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 151563 0.68 0.810244
Target:  5'- uGCUGCugacGUAGCGccccccGGCGgCGCGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCa-----CCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 67203 0.68 0.810244
Target:  5'- aGCgucCGGGcGguGCGcucGGCGCCGgGCg -3'
miRNA:   3'- -CGau-GUUCaCguCGCa--CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 48155 0.68 0.835282
Target:  5'- --gACGAG-GCAGC--GGCGCCGCu- -3'
miRNA:   3'- cgaUGUUCaCGUCGcaCCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 84285 0.68 0.834472
Target:  5'- aGCUGCcgacgggGAGcgGCGGCGcuuccUGGCGaCCGgGCc -3'
miRNA:   3'- -CGAUG-------UUCa-CGUCGC-----ACCGC-GGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 184613 0.68 0.827103
Target:  5'- gGCaACGgccAGcgGCAGCGUccacgaucGGCGUCGCGUc -3'
miRNA:   3'- -CGaUGU---UCa-CGUCGCA--------CCGCGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.