miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 188267 0.8 0.229558
Target:  5'- aGCgGCGGGccggGUAGCGgaugcagGGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa---CGUCGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 144432 0.79 0.25832
Target:  5'- uGCUGCGccgAGUGCAGcCGUGcGCGCaccuGCGCg -3'
miRNA:   3'- -CGAUGU---UCACGUC-GCAC-CGCGg---CGCG- -5'
11033 5' -57.1 NC_002794.1 + 190433 0.78 0.316693
Target:  5'- aGCaGCAGGUGCGacacgaaauacguGCGcGGCGUCGCGCc -3'
miRNA:   3'- -CGaUGUUCACGU-------------CGCaCCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 121300 0.77 0.352852
Target:  5'- aGUUACAAcGUGCAgaucgGCGguuggcccucgaGGCGCCGCGCg -3'
miRNA:   3'- -CGAUGUU-CACGU-----CGCa-----------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 176282 0.76 0.386098
Target:  5'- --aGCAAugGCAGCGaUGGCGCCGCGa -3'
miRNA:   3'- cgaUGUUcaCGUCGC-ACCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 101797 0.76 0.394313
Target:  5'- uGCUGCGccgcugguuGGcGCAGCG-GcGCGCCGUGCg -3'
miRNA:   3'- -CGAUGU---------UCaCGUCGCaC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 62686 0.76 0.402641
Target:  5'- cCUGCGGGUGCAGCuGUgucggcGGcCGCCGaCGCg -3'
miRNA:   3'- cGAUGUUCACGUCG-CA------CC-GCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 91103 0.75 0.44234
Target:  5'- aGCUGCuguacgccggGCAGC-UGGUGCCGUGCg -3'
miRNA:   3'- -CGAUGuuca------CGUCGcACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 103798 0.74 0.463912
Target:  5'- aGCUugAGGUGCGccuGCGacggcGGCGCCGaCGUg -3'
miRNA:   3'- -CGAugUUCACGU---CGCa----CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 55290 0.74 0.463912
Target:  5'- gGCgACGAGgGCGGCGgcGGCGUCGCGg -3'
miRNA:   3'- -CGaUGUUCaCGUCGCa-CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 55800 0.74 0.473061
Target:  5'- --aGCGAGcGCAGCGccgGGCGCgggCGCGCg -3'
miRNA:   3'- cgaUGUUCaCGUCGCa--CCGCG---GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 102492 0.74 0.501034
Target:  5'- gGCUuccACGuccuGuUGCAGCGgcUGGCGCgCGCGCg -3'
miRNA:   3'- -CGA---UGUu---C-ACGUCGC--ACCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 58867 0.73 0.520081
Target:  5'- cGCcgACcg--GCAGcCGUGcGCGCCGCGCa -3'
miRNA:   3'- -CGa-UGuucaCGUC-GCAC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 88925 0.73 0.529711
Target:  5'- -aUGCccgcGGUGCGGCGaUGGCGCgGUGUa -3'
miRNA:   3'- cgAUGu---UCACGUCGC-ACCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 110664 0.73 0.539406
Target:  5'- gGCUGCAgacAGUGCAGCacgcuGUGGuCGUCGCcCg -3'
miRNA:   3'- -CGAUGU---UCACGUCG-----CACC-GCGGCGcG- -5'
11033 5' -57.1 NC_002794.1 + 62490 0.73 0.539406
Target:  5'- aGC-GCGAGUGgaCGGCGggcGGCGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCAC--GUCGCa--CCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 111716 0.73 0.54916
Target:  5'- aGCUugAGGUugacgagcggGCGaacGCGcucgucgagcUGGCGCCGCGCg -3'
miRNA:   3'- -CGAugUUCA----------CGU---CGC----------ACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 103927 0.73 0.54916
Target:  5'- cGCgGCGAGcaGCGcGCGUGGcCGCCGcCGCu -3'
miRNA:   3'- -CGaUGUUCa-CGU-CGCACC-GCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 143301 0.73 0.557985
Target:  5'- --gGCGGGUGCAGCGcGGCgggauggaagucgGUCGCGUg -3'
miRNA:   3'- cgaUGUUCACGUCGCaCCG-------------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 99795 0.73 0.558968
Target:  5'- aCUACGAGcGCGcgccGCG-GGCGCCgGCGCc -3'
miRNA:   3'- cGAUGUUCaCGU----CGCaCCGCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.