miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 115037 0.73 0.558968
Target:  5'- uCUGCAGGUGCgaccgGGCGgcgGGCGgCaGCGCc -3'
miRNA:   3'- cGAUGUUCACG-----UCGCa--CCGCgG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 117422 0.73 0.558968
Target:  5'- cGCUGCAGGagcUGCcGCGaGGCGuuGCGg -3'
miRNA:   3'- -CGAUGUUC---ACGuCGCaCCGCggCGCg -5'
11033 5' -57.1 NC_002794.1 + 53294 0.73 0.558968
Target:  5'- aCUcCAGGUGCcgAGCGgucggccGGCGCCGCGa -3'
miRNA:   3'- cGAuGUUCACG--UCGCa------CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 46307 0.73 0.568825
Target:  5'- cGUUcCGAGcGCGGCGgcgacGGCGCCGuCGCc -3'
miRNA:   3'- -CGAuGUUCaCGUCGCa----CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 142400 0.73 0.568825
Target:  5'- cGgUGCAg--GCGGCGUcggcGGCGCCGgGCg -3'
miRNA:   3'- -CgAUGUucaCGUCGCA----CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 59354 0.72 0.578725
Target:  5'- uCUACAacGGcUGCuGCGccaccacGGCGCCGCGCc -3'
miRNA:   3'- cGAUGU--UC-ACGuCGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 78770 0.72 0.607617
Target:  5'- --aGCAAGcGCAGCagGUGGCGCaccaccuccguauCGCGCg -3'
miRNA:   3'- cgaUGUUCaCGUCG--CACCGCG-------------GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 58073 0.72 0.608617
Target:  5'- gGCgGCGGGacggGCGGCccGGCGCcCGCGCu -3'
miRNA:   3'- -CGaUGUUCa---CGUCGcaCCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 34856 0.72 0.618624
Target:  5'- cGgaGCGGGcGCcGCG-GGCGCCGCGg -3'
miRNA:   3'- -CgaUGUUCaCGuCGCaCCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 13104 0.72 0.618624
Target:  5'- --gACgAGGUGCguucGGCGgGGuCGCCGCGCg -3'
miRNA:   3'- cgaUG-UUCACG----UCGCaCC-GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 147683 0.71 0.628641
Target:  5'- cGCU-CGAGgacccgGCGGCGaugcGGCGCaCGUGCg -3'
miRNA:   3'- -CGAuGUUCa-----CGUCGCa---CCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 14455 0.71 0.628641
Target:  5'- cGCggGCGAccGUGUcgAGCG-GcGCGCCGCGCu -3'
miRNA:   3'- -CGa-UGUU--CACG--UCGCaC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 99572 0.71 0.63866
Target:  5'- cGCggGCGAGgggGguGCGgagGGCGCgGCGg -3'
miRNA:   3'- -CGa-UGUUCa--CguCGCa--CCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 107231 0.71 0.645671
Target:  5'- cGCgcgACGGGgGCGGCGUcgcggaccuggcccGGCggaGCCGCGCc -3'
miRNA:   3'- -CGa--UGUUCaCGUCGCA--------------CCG---CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 80401 0.71 0.648675
Target:  5'- cCUACucGccGCGGCccagGUGGCGCCGgGCg -3'
miRNA:   3'- cGAUGuuCa-CGUCG----CACCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 104888 0.71 0.648675
Target:  5'- --aGCGGGccgGCcGCGaGGCGCCGUGCu -3'
miRNA:   3'- cgaUGUUCa--CGuCGCaCCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 107050 0.71 0.648675
Target:  5'- cGCgucgGAG-GCGGCG-GGCGCgGCGCc -3'
miRNA:   3'- -CGaug-UUCaCGUCGCaCCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 134267 0.71 0.658676
Target:  5'- --gACGcGUGCGGCGUGGUGUacggauacgaGCGCc -3'
miRNA:   3'- cgaUGUuCACGUCGCACCGCGg---------CGCG- -5'
11033 5' -57.1 NC_002794.1 + 107174 0.71 0.668658
Target:  5'- cGCUAC----GCGGCGgagccGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuucaCGUCGCa----CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 59168 0.7 0.688527
Target:  5'- cGCUGCuGGcGCAGCugcuggaccccGUGGCGgucgaCGCGCa -3'
miRNA:   3'- -CGAUGuUCaCGUCG-----------CACCGCg----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.