miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 56890 0.7 0.697414
Target:  5'- uCUACAuccaGGUGCcgcGCGUggccacgGGCGCCGgGCu -3'
miRNA:   3'- cGAUGU----UCACGu--CGCA-------CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 92226 0.7 0.698399
Target:  5'- cGCUACGccggcgacgccaAGgagcccucgGCGGCGUcgcuggcggcGGCGCCGgGCg -3'
miRNA:   3'- -CGAUGU------------UCa--------CGUCGCA----------CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 94400 0.7 0.698399
Target:  5'- cGCgUGCGGGgaccGCGGUGUGGgGC-GCGCc -3'
miRNA:   3'- -CG-AUGUUCa---CGUCGCACCgCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 11778 0.7 0.708217
Target:  5'- cGCUcACGGGaucgccGCGGUguccGUGGCGCCGcCGCc -3'
miRNA:   3'- -CGA-UGUUCa-----CGUCG----CACCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 103885 0.7 0.708217
Target:  5'- aGCgACGAGagcgacgaGCAGCGgGGCgagaacGCCGCGCa -3'
miRNA:   3'- -CGaUGUUCa-------CGUCGCaCCG------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 36702 0.7 0.717001
Target:  5'- ------cGUGCAGaccuccaggcucaCGUGGCGCuCGCGCa -3'
miRNA:   3'- cgauguuCACGUC-------------GCACCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 19969 0.7 0.717973
Target:  5'- aGCUGCGGccGCccuucgGGCuguccguccugGUGGCGCUGCGCa -3'
miRNA:   3'- -CGAUGUUcaCG------UCG-----------CACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 108193 0.7 0.717973
Target:  5'- aCUGCGA--GCGGCGcUGcGcCGCCGCGCc -3'
miRNA:   3'- cGAUGUUcaCGUCGC-AC-C-GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 96890 0.7 0.726694
Target:  5'- cGCUACGGGgcagGCgucgggcggagguGGCGgaGGCGCCG-GCg -3'
miRNA:   3'- -CGAUGUUCa---CG-------------UCGCa-CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 193594 0.7 0.727659
Target:  5'- gGCUcACcgucGUGUAGCGUaccgcGGCGCCGUGg -3'
miRNA:   3'- -CGA-UGuu--CACGUCGCA-----CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 125928 0.7 0.727659
Target:  5'- cGCUGCucGUcgaGCAGUuccucGUGGcCGCCuGCGCg -3'
miRNA:   3'- -CGAUGuuCA---CGUCG-----CACC-GCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 104595 0.7 0.727659
Target:  5'- gGC-ACGAGUGCAGgau-GCGCuCGCGCa -3'
miRNA:   3'- -CGaUGUUCACGUCgcacCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 137617 0.7 0.731512
Target:  5'- cGCgGCGgcGGUGCccacgacgacguccuGGCG-GGCGCCGgGCc -3'
miRNA:   3'- -CGaUGU--UCACG---------------UCGCaCCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 126255 0.7 0.738223
Target:  5'- cGC-GCGAGgucggcggcuggcugGCGGCGcugggcuugcUGuGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa--------------CGUCGC----------AC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 39510 0.69 0.745838
Target:  5'- cGCUACAugaaGGUGCAGUucggcuaccaccuGgGGCuGCUGUGCg -3'
miRNA:   3'- -CGAUGU----UCACGUCG-------------CaCCG-CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 78689 0.69 0.756209
Target:  5'- gGCcGCAuGUGCGGCcgacacGGCGCCGC-Ca -3'
miRNA:   3'- -CGaUGUuCACGUCGca----CCGCGGCGcG- -5'
11033 5' -57.1 NC_002794.1 + 91747 0.69 0.765527
Target:  5'- --aACAAgGUGcCGGCG-GGCGgcaCCGCGCa -3'
miRNA:   3'- cgaUGUU-CAC-GUCGCaCCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 11060 0.69 0.765527
Target:  5'- cCUGCGGGUGCAGaCuUGGUacGCCGCcuGCc -3'
miRNA:   3'- cGAUGUUCACGUC-GcACCG--CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 85034 0.69 0.765527
Target:  5'- cGCU-CGGGUGCcuCG-GGC-CCGCGCu -3'
miRNA:   3'- -CGAuGUUCACGucGCaCCGcGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 59901 0.69 0.765527
Target:  5'- cGCcGCGuGcGCAGCGacaugGGCGCCcGCGUg -3'
miRNA:   3'- -CGaUGUuCaCGUCGCa----CCGCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.