miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 121038 0.69 0.774731
Target:  5'- ----gGAGaGCGGCGcgucgGGCGCCGCGa -3'
miRNA:   3'- cgaugUUCaCGUCGCa----CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 153402 0.69 0.774731
Target:  5'- --cGCGAGcUGUcGCGa-GCGCCGCGCg -3'
miRNA:   3'- cgaUGUUC-ACGuCGCacCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 75643 0.69 0.774731
Target:  5'- cGCUACAcacgAGcgGCAGC--GGCGCCGUccGCc -3'
miRNA:   3'- -CGAUGU----UCa-CGUCGcaCCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 72334 0.69 0.774731
Target:  5'- aUUGCAgucGGUGgAGCcgGUGGCGCUGCa- -3'
miRNA:   3'- cGAUGU---UCACgUCG--CACCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 118881 0.69 0.783814
Target:  5'- aGCUGCAGGU-CGGCccGGUGuUCGCGUa -3'
miRNA:   3'- -CGAUGUUCAcGUCGcaCCGC-GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 141423 0.69 0.783814
Target:  5'- cCU-CGGGgGCGGCGggGGCGCCggggGCGCc -3'
miRNA:   3'- cGAuGUUCaCGUCGCa-CCGCGG----CGCG- -5'
11033 5' -57.1 NC_002794.1 + 96362 0.69 0.792765
Target:  5'- cCUGgcCGAGgGCAcCGUGGCGCCGaGCg -3'
miRNA:   3'- cGAU--GUUCaCGUcGCACCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 135713 0.68 0.798949
Target:  5'- cGCU-CGAGcUGCuGCGUaGcaucugcaccugccGCGCCGCGCc -3'
miRNA:   3'- -CGAuGUUC-ACGuCGCA-C--------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 192424 0.68 0.801578
Target:  5'- cGCgACGGGUccGCGGCc-GGCGCguCGCGCg -3'
miRNA:   3'- -CGaUGUUCA--CGUCGcaCCGCG--GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 149785 0.68 0.801578
Target:  5'- gGCgUACGGGUGguGCGUGGauCUGgGUu -3'
miRNA:   3'- -CG-AUGUUCACguCGCACCgcGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 123483 0.68 0.801578
Target:  5'- cGCUGCGGac-CAGCGUGGaccugugcauCGCCGgGCu -3'
miRNA:   3'- -CGAUGUUcacGUCGCACC----------GCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 156024 0.68 0.801578
Target:  5'- --cAUggGUcGCAGcCGUcGCGUCGCGCg -3'
miRNA:   3'- cgaUGuuCA-CGUC-GCAcCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 67203 0.68 0.810244
Target:  5'- aGCgucCGGGcGguGCGcucGGCGCCGgGCg -3'
miRNA:   3'- -CGau-GUUCaCguCGCa--CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 58449 0.68 0.810244
Target:  5'- cGCUGCGccugGCcGCGcUGGCGCUGCa- -3'
miRNA:   3'- -CGAUGUuca-CGuCGC-ACCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 151563 0.68 0.810244
Target:  5'- uGCUGCugacGUAGCGccccccGGCGgCGCGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCa-----CCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 44318 0.68 0.818755
Target:  5'- aGCgaccGCGAGcGCGGCGgcgaagaagacGGCGCCG-GCg -3'
miRNA:   3'- -CGa---UGUUCaCGUCGCa----------CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 114025 0.68 0.818755
Target:  5'- -gUACAGGcgggGCAGCGgccgcccguaGuCGCCGCGCa -3'
miRNA:   3'- cgAUGUUCa---CGUCGCac--------C-GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 34231 0.68 0.818755
Target:  5'- aGgUGCAGGagcUGCAcGCGcGGCuGCCGcCGCa -3'
miRNA:   3'- -CgAUGUUC---ACGU-CGCaCCG-CGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 114650 0.68 0.827103
Target:  5'- aGCUGCcGGUGCuGUuc-GCGCgCGCGCc -3'
miRNA:   3'- -CGAUGuUCACGuCGcacCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184613 0.68 0.827103
Target:  5'- gGCaACGgccAGcgGCAGCGUccacgaucGGCGUCGCGUc -3'
miRNA:   3'- -CGaUGU---UCa-CGUCGCA--------CCGCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.