miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 53764 0.68 0.827103
Target:  5'- cGCUGCcg--GCGGCG-GGaCGCC-CGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCaCC-GCGGcGCG- -5'
11033 5' -57.1 NC_002794.1 + 114650 0.68 0.827103
Target:  5'- aGCUGCcGGUGCuGUuc-GCGCgCGCGCc -3'
miRNA:   3'- -CGAUGuUCACGuCGcacCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184816 0.68 0.827103
Target:  5'- aGCgucACGGG-GCAcGCGUccgGGCGCacCGCGCa -3'
miRNA:   3'- -CGa--UGUUCaCGU-CGCA---CCGCG--GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184485 0.68 0.827929
Target:  5'- cGC-GCGGGgccccggacgcccggGCGGCGcgGGCcCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa--------------CGUCGCa-CCGcGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 84285 0.68 0.834472
Target:  5'- aGCUGCcgacgggGAGcgGCGGCGcuuccUGGCGaCCGgGCc -3'
miRNA:   3'- -CGAUG-------UUCa-CGUCGC-----ACCGC-GGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 48155 0.68 0.835282
Target:  5'- --gACGAG-GCAGC--GGCGCCGCu- -3'
miRNA:   3'- cgaUGUUCaCGUCGcaCCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 102603 0.67 0.841697
Target:  5'- cGCUACAAGcagcucaaccUGCcgcaccuGGCGgucauccgccggcUGGCGgCGCGCu -3'
miRNA:   3'- -CGAUGUUC----------ACG-------UCGC-------------ACCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 71785 0.67 0.843283
Target:  5'- cGCgcgGCGAGUcGCcccccGGCG-GGCGCgGCGa -3'
miRNA:   3'- -CGa--UGUUCA-CG-----UCGCaCCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 56087 0.67 0.843283
Target:  5'- --aGCAGGccgcGCAGCacGUGcGUGCUGCGCu -3'
miRNA:   3'- cgaUGUUCa---CGUCG--CAC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 190984 0.67 0.843283
Target:  5'- --aGCAGGcagcGCGGCGacGGCGUCGCGa -3'
miRNA:   3'- cgaUGUUCa---CGUCGCa-CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 54242 0.67 0.843283
Target:  5'- aGCggcCGAGcGC-GCGguccacGGCGCCGCGUc -3'
miRNA:   3'- -CGau-GUUCaCGuCGCa-----CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 182191 0.67 0.843283
Target:  5'- --aACGGGgccuCGGCGccGGCGUCGCGCc -3'
miRNA:   3'- cgaUGUUCac--GUCGCa-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 21903 0.67 0.846433
Target:  5'- cCUGCGucgguGGUgGCGGCGgagacgacggcggcGGCGCgGCGCu -3'
miRNA:   3'- cGAUGU-----UCA-CGUCGCa-------------CCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 94816 0.67 0.850327
Target:  5'- cGCUacuaccgGCGGGUGCuGCGgcUGGacCGCUGUGCc -3'
miRNA:   3'- -CGA-------UGUUCACGuCGC--ACC--GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 138961 0.67 0.851101
Target:  5'- uGCUGCGAc-GCGGCGgacggguuggccUGGCGggcCUGCGCg -3'
miRNA:   3'- -CGAUGUUcaCGUCGC------------ACCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 139996 0.67 0.851101
Target:  5'- cGCgggAC-GGUGCGG-GUGGagGCCGCGg -3'
miRNA:   3'- -CGa--UGuUCACGUCgCACCg-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 141634 0.67 0.858728
Target:  5'- aGCgACGGGaagGcCGGCGUGGCcgcgGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCa--C-GUCGCACCG----CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 113370 0.67 0.858728
Target:  5'- cGgaACGGGUGCGGgccgccguCGUgcaGGCGCUGCaGCa -3'
miRNA:   3'- -CgaUGUUCACGUC--------GCA---CCGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 102150 0.67 0.858728
Target:  5'- cGCUucg---GCGGCGUGcGCGCCGgGg -3'
miRNA:   3'- -CGAuguucaCGUCGCAC-CGCGGCgCg -5'
11033 5' -57.1 NC_002794.1 + 44234 0.67 0.858728
Target:  5'- gGCUc--GGUGCcgGGCGgcucGGUGCCGgGCg -3'
miRNA:   3'- -CGAuguUCACG--UCGCa---CCGCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.