miRNA display CGI


Results 41 - 60 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 127343 0.67 0.866159
Target:  5'- cGCUGcCGAGacgcucGCGGCGgcGGCGCgGcCGCu -3'
miRNA:   3'- -CGAU-GUUCa-----CGUCGCa-CCGCGgC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 120032 0.67 0.85948
Target:  5'- --cGCGGGgacgucgucaugacgGCGGCgGUGGCGgCCGCGg -3'
miRNA:   3'- cgaUGUUCa--------------CGUCG-CACCGC-GGCGCg -5'
11033 5' -57.1 NC_002794.1 + 183590 0.67 0.858728
Target:  5'- -aUAC-GGUgGgGGCGgaggGGgGCCGCGCg -3'
miRNA:   3'- cgAUGuUCA-CgUCGCa---CCgCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 141634 0.67 0.858728
Target:  5'- aGCgACGGGaagGcCGGCGUGGCcgcgGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCa--C-GUCGCACCG----CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 113370 0.67 0.858728
Target:  5'- cGgaACGGGUGCGGgccgccguCGUgcaGGCGCUGCaGCa -3'
miRNA:   3'- -CgaUGUUCACGUC--------GCA---CCGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 102150 0.67 0.858728
Target:  5'- cGCUucg---GCGGCGUGcGCGCCGgGg -3'
miRNA:   3'- -CGAuguucaCGUCGCAC-CGCGGCgCg -5'
11033 5' -57.1 NC_002794.1 + 44234 0.67 0.858728
Target:  5'- gGCUc--GGUGCcgGGCGgcucGGUGCCGgGCg -3'
miRNA:   3'- -CGAuguUCACG--UCGCa---CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 149208 0.67 0.858728
Target:  5'- aGCUAUccGgcugGCcggaAGCGaGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuuCa---CG----UCGCaCCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 139996 0.67 0.851101
Target:  5'- cGCgggAC-GGUGCGG-GUGGagGCCGCGg -3'
miRNA:   3'- -CGa--UGuUCACGUCgCACCg-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 138961 0.67 0.851101
Target:  5'- uGCUGCGAc-GCGGCGgacggguuggccUGGCGggcCUGCGCg -3'
miRNA:   3'- -CGAUGUUcaCGUCGC------------ACCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 94816 0.67 0.850327
Target:  5'- cGCUacuaccgGCGGGUGCuGCGgcUGGacCGCUGUGCc -3'
miRNA:   3'- -CGA-------UGUUCACGuCGC--ACC--GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 21903 0.67 0.846433
Target:  5'- cCUGCGucgguGGUgGCGGCGgagacgacggcggcGGCGCgGCGCu -3'
miRNA:   3'- cGAUGU-----UCA-CGUCGCa-------------CCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 182191 0.67 0.843283
Target:  5'- --aACGGGgccuCGGCGccGGCGUCGCGCc -3'
miRNA:   3'- cgaUGUUCac--GUCGCa-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 71785 0.67 0.843283
Target:  5'- cGCgcgGCGAGUcGCcccccGGCG-GGCGCgGCGa -3'
miRNA:   3'- -CGa--UGUUCA-CG-----UCGCaCCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 56087 0.67 0.843283
Target:  5'- --aGCAGGccgcGCAGCacGUGcGUGCUGCGCu -3'
miRNA:   3'- cgaUGUUCa---CGUCG--CAC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 54242 0.67 0.843283
Target:  5'- aGCggcCGAGcGC-GCGguccacGGCGCCGCGUc -3'
miRNA:   3'- -CGau-GUUCaCGuCGCa-----CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 190984 0.67 0.843283
Target:  5'- --aGCAGGcagcGCGGCGacGGCGUCGCGa -3'
miRNA:   3'- cgaUGUUCa---CGUCGCa-CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 102603 0.67 0.841697
Target:  5'- cGCUACAAGcagcucaaccUGCcgcaccuGGCGgucauccgccggcUGGCGgCGCGCu -3'
miRNA:   3'- -CGAUGUUC----------ACG-------UCGC-------------ACCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 48155 0.68 0.835282
Target:  5'- --gACGAG-GCAGC--GGCGCCGCu- -3'
miRNA:   3'- cgaUGUUCaCGUCGcaCCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 84285 0.68 0.834472
Target:  5'- aGCUGCcgacgggGAGcgGCGGCGcuuccUGGCGaCCGgGCc -3'
miRNA:   3'- -CGAUG-------UUCa-CGUCGC-----ACCGC-GGCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.