miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 53054 0.66 0.906345
Target:  5'- gGCUccaGCGuagGCAGCGccGCGCCGCcaGCu -3'
miRNA:   3'- -CGA---UGUucaCGUCGCacCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 53294 0.73 0.558968
Target:  5'- aCUcCAGGUGCcgAGCGgucggccGGCGCCGCGa -3'
miRNA:   3'- cGAuGUUCACG--UCGCa------CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 53764 0.68 0.827103
Target:  5'- cGCUGCcg--GCGGCG-GGaCGCC-CGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCaCC-GCGGcGCG- -5'
11033 5' -57.1 NC_002794.1 + 54242 0.67 0.843283
Target:  5'- aGCggcCGAGcGC-GCGguccacGGCGCCGCGUc -3'
miRNA:   3'- -CGau-GUUCaCGuCGCa-----CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 55290 0.74 0.463912
Target:  5'- gGCgACGAGgGCGGCGgcGGCGUCGCGg -3'
miRNA:   3'- -CGaUGUUCaCGUCGCa-CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 55800 0.74 0.473061
Target:  5'- --aGCGAGcGCAGCGccgGGCGCgggCGCGCg -3'
miRNA:   3'- cgaUGUUCaCGUCGCa--CCGCG---GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 56087 0.67 0.843283
Target:  5'- --aGCAGGccgcGCAGCacGUGcGUGCUGCGCu -3'
miRNA:   3'- cgaUGUUCa---CGUCG--CAC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 56890 0.7 0.697414
Target:  5'- uCUACAuccaGGUGCcgcGCGUggccacgGGCGCCGgGCu -3'
miRNA:   3'- cGAUGU----UCACGu--CGCA-------CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 57151 0.66 0.893817
Target:  5'- uGCU-CAcGcUGCuGCGcaaGGCGCCGcCGCa -3'
miRNA:   3'- -CGAuGUuC-ACGuCGCa--CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 58073 0.72 0.608617
Target:  5'- gGCgGCGGGacggGCGGCccGGCGCcCGCGCu -3'
miRNA:   3'- -CGaUGUUCa---CGUCGcaCCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 58449 0.68 0.810244
Target:  5'- cGCUGCGccugGCcGCGcUGGCGCUGCa- -3'
miRNA:   3'- -CGAUGUuca-CGuCGC-ACCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 58867 0.73 0.520081
Target:  5'- cGCcgACcg--GCAGcCGUGcGCGCCGCGCa -3'
miRNA:   3'- -CGa-UGuucaCGUC-GCAC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 59168 0.7 0.688527
Target:  5'- cGCUGCuGGcGCAGCugcuggaccccGUGGCGgucgaCGCGCa -3'
miRNA:   3'- -CGAUGuUCaCGUCG-----------CACCGCg----GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 59354 0.72 0.578725
Target:  5'- uCUACAacGGcUGCuGCGccaccacGGCGCCGCGCc -3'
miRNA:   3'- cGAUGU--UC-ACGuCGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 59901 0.69 0.765527
Target:  5'- cGCcGCGuGcGCAGCGacaugGGCGCCcGCGUg -3'
miRNA:   3'- -CGaUGUuCaCGUCGCa----CCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 61871 0.66 0.900192
Target:  5'- cGCcGCGc--GCcGuCGUcGGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUucaCGuC-GCA-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 62490 0.73 0.539406
Target:  5'- aGC-GCGAGUGgaCGGCGggcGGCGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCAC--GUCGCa--CCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 62686 0.76 0.402641
Target:  5'- cCUGCGGGUGCAGCuGUgucggcGGcCGCCGaCGCg -3'
miRNA:   3'- cGAUGUUCACGUCG-CA------CC-GCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 67011 0.66 0.900192
Target:  5'- --gACGAGUccggcgGCGGCGgccGGCucccGCCGCGUc -3'
miRNA:   3'- cgaUGUUCA------CGUCGCa--CCG----CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 67203 0.68 0.810244
Target:  5'- aGCgucCGGGcGguGCGcucGGCGCCGgGCg -3'
miRNA:   3'- -CGau-GUUCaCguCGCa--CCGCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.