miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 67419 0.66 0.893817
Target:  5'- gGCgccaGCGucgGCGGCGUGucGCGCCGCu- -3'
miRNA:   3'- -CGa---UGUucaCGUCGCAC--CGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 70070 0.66 0.905739
Target:  5'- gGCcGCAGccGCAGCaaGGCgacgcagGCCGCGCa -3'
miRNA:   3'- -CGaUGUUcaCGUCGcaCCG-------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 71785 0.67 0.843283
Target:  5'- cGCgcgGCGAGUcGCcccccGGCG-GGCGCgGCGa -3'
miRNA:   3'- -CGa--UGUUCA-CG-----UCGCaCCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 72334 0.69 0.774731
Target:  5'- aUUGCAgucGGUGgAGCcgGUGGCGCUGCa- -3'
miRNA:   3'- cGAUGU---UCACgUCG--CACCGCGGCGcg -5'
11033 5' -57.1 NC_002794.1 + 75643 0.69 0.774731
Target:  5'- cGCUACAcacgAGcgGCAGC--GGCGCCGUccGCc -3'
miRNA:   3'- -CGAUGU----UCa-CGUCGcaCCGCGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 78689 0.69 0.756209
Target:  5'- gGCcGCAuGUGCGGCcgacacGGCGCCGC-Ca -3'
miRNA:   3'- -CGaUGUuCACGUCGca----CCGCGGCGcG- -5'
11033 5' -57.1 NC_002794.1 + 78770 0.72 0.607617
Target:  5'- --aGCAAGcGCAGCagGUGGCGCaccaccuccguauCGCGCg -3'
miRNA:   3'- cgaUGUUCaCGUCG--CACCGCG-------------GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 80401 0.71 0.648675
Target:  5'- cCUACucGccGCGGCccagGUGGCGCCGgGCg -3'
miRNA:   3'- cGAUGuuCa-CGUCG----CACCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 84285 0.68 0.834472
Target:  5'- aGCUGCcgacgggGAGcgGCGGCGcuuccUGGCGaCCGgGCc -3'
miRNA:   3'- -CGAUG-------UUCa-CGUCGC-----ACCGC-GGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 85034 0.69 0.765527
Target:  5'- cGCU-CGGGUGCcuCG-GGC-CCGCGCu -3'
miRNA:   3'- -CGAuGUUCACGucGCaCCGcGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 87351 0.66 0.893817
Target:  5'- aGCaGCGGGUccggcggcgaGCGGCGUucugGGCGgCGCGg -3'
miRNA:   3'- -CGaUGUUCA----------CGUCGCA----CCGCgGCGCg -5'
11033 5' -57.1 NC_002794.1 + 87818 0.66 0.917973
Target:  5'- cCUACuAGcGC-GCGUGcGCGuauCCGCGCg -3'
miRNA:   3'- cGAUGuUCaCGuCGCAC-CGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 88925 0.73 0.529711
Target:  5'- -aUGCccgcGGUGCGGCGaUGGCGCgGUGUa -3'
miRNA:   3'- cgAUGu---UCACGUCGC-ACCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 90103 0.67 0.873389
Target:  5'- uCUGCGcc-GCGGUG-GGCGCCGUGa -3'
miRNA:   3'- cGAUGUucaCGUCGCaCCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 91103 0.75 0.44234
Target:  5'- aGCUGCuguacgccggGCAGC-UGGUGCCGUGCg -3'
miRNA:   3'- -CGAUGuuca------CGUCGcACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 91319 0.66 0.917973
Target:  5'- uCUACuacGUGUucacGGCGcugggucaGGCGCUGCGCu -3'
miRNA:   3'- cGAUGuu-CACG----UCGCa-------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 91747 0.69 0.765527
Target:  5'- --aACAAgGUGcCGGCG-GGCGgcaCCGCGCa -3'
miRNA:   3'- cgaUGUU-CAC-GUCGCaCCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 92226 0.7 0.698399
Target:  5'- cGCUACGccggcgacgccaAGgagcccucgGCGGCGUcgcuggcggcGGCGCCGgGCg -3'
miRNA:   3'- -CGAUGU------------UCa--------CGUCGCA----------CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 92424 0.66 0.917973
Target:  5'- aGCacggGCGAGgacacgcugGCcGUGcGGgGCCGCGCg -3'
miRNA:   3'- -CGa---UGUUCa--------CGuCGCaCCgCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 94400 0.7 0.698399
Target:  5'- cGCgUGCGGGgaccGCGGUGUGGgGC-GCGCc -3'
miRNA:   3'- -CG-AUGUUCa---CGUCGCACCgCGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.