miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 94816 0.67 0.850327
Target:  5'- cGCUacuaccgGCGGGUGCuGCGgcUGGacCGCUGUGCc -3'
miRNA:   3'- -CGA-------UGUUCACGuCGC--ACC--GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 96362 0.69 0.792765
Target:  5'- cCUGgcCGAGgGCAcCGUGGCGCCGaGCg -3'
miRNA:   3'- cGAU--GUUCaCGUcGCACCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 96890 0.7 0.726694
Target:  5'- cGCUACGGGgcagGCgucgggcggagguGGCGgaGGCGCCG-GCg -3'
miRNA:   3'- -CGAUGUUCa---CG-------------UCGCa-CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 99572 0.71 0.63866
Target:  5'- cGCggGCGAGgggGguGCGgagGGCGCgGCGg -3'
miRNA:   3'- -CGa-UGUUCa--CguCGCa--CCGCGgCGCg -5'
11033 5' -57.1 NC_002794.1 + 99690 0.67 0.866159
Target:  5'- --cAUAAcUGC-GCGcUGGCGCCGCGg -3'
miRNA:   3'- cgaUGUUcACGuCGC-ACCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 99795 0.73 0.558968
Target:  5'- aCUACGAGcGCGcgccGCG-GGCGCCgGCGCc -3'
miRNA:   3'- cGAUGUUCaCGU----CGCaCCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 100371 0.66 0.891205
Target:  5'- aCUGCGAGguggccgacguccGCGGCGUGGacgaCGUgGCGUg -3'
miRNA:   3'- cGAUGUUCa------------CGUCGCACC----GCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 101797 0.76 0.394313
Target:  5'- uGCUGCGccgcugguuGGcGCAGCG-GcGCGCCGUGCg -3'
miRNA:   3'- -CGAUGU---------UCaCGUCGCaC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 102150 0.67 0.858728
Target:  5'- cGCUucg---GCGGCGUGcGCGCCGgGg -3'
miRNA:   3'- -CGAuguucaCGUCGCAC-CGCGGCgCg -5'
11033 5' -57.1 NC_002794.1 + 102492 0.74 0.501034
Target:  5'- gGCUuccACGuccuGuUGCAGCGgcUGGCGCgCGCGCg -3'
miRNA:   3'- -CGA---UGUu---C-ACGUCGC--ACCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 102603 0.67 0.841697
Target:  5'- cGCUACAAGcagcucaaccUGCcgcaccuGGCGgucauccgccggcUGGCGgCGCGCu -3'
miRNA:   3'- -CGAUGUUC----------ACG-------UCGC-------------ACCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 103798 0.74 0.463912
Target:  5'- aGCUugAGGUGCGccuGCGacggcGGCGCCGaCGUg -3'
miRNA:   3'- -CGAugUUCACGU---CGCa----CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 103885 0.7 0.708217
Target:  5'- aGCgACGAGagcgacgaGCAGCGgGGCgagaacGCCGCGCa -3'
miRNA:   3'- -CGaUGUUCa-------CGUCGCaCCG------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 103927 0.73 0.54916
Target:  5'- cGCgGCGAGcaGCGcGCGUGGcCGCCGcCGCu -3'
miRNA:   3'- -CGaUGUUCa-CGU-CGCACC-GCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 104595 0.7 0.727659
Target:  5'- gGC-ACGAGUGCAGgau-GCGCuCGCGCa -3'
miRNA:   3'- -CGaUGUUCACGUCgcacCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 104888 0.71 0.648675
Target:  5'- --aGCGGGccgGCcGCGaGGCGCCGUGCu -3'
miRNA:   3'- cgaUGUUCa--CGuCGCaCCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 106237 0.67 0.869076
Target:  5'- cGCU-CGGGUcGCagaccgccgcgaaccGGCGa-GCGCCGCGCg -3'
miRNA:   3'- -CGAuGUUCA-CG---------------UCGCacCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 107050 0.71 0.648675
Target:  5'- cGCgucgGAG-GCGGCG-GGCGCgGCGCc -3'
miRNA:   3'- -CGaug-UUCaCGUCGCaCCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 107174 0.71 0.668658
Target:  5'- cGCUAC----GCGGCGgagccGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuucaCGUCGCa----CCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 107231 0.71 0.645671
Target:  5'- cGCgcgACGGGgGCGGCGUcgcggaccuggcccGGCggaGCCGCGCc -3'
miRNA:   3'- -CGa--UGUUCaCGUCGCA--------------CCG---CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.