miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 195220 0.66 0.917973
Target:  5'- aGCUGCGGcaGCAGCcc-GCGCgGCGUc -3'
miRNA:   3'- -CGAUGUUcaCGUCGcacCGCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 193594 0.7 0.727659
Target:  5'- gGCUcACcgucGUGUAGCGUaccgcGGCGCCGUGg -3'
miRNA:   3'- -CGA-UGuu--CACGUCGCA-----CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 192424 0.68 0.801578
Target:  5'- cGCgACGGGUccGCGGCc-GGCGCguCGCGCg -3'
miRNA:   3'- -CGaUGUUCA--CGUCGcaCCGCG--GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 191510 0.66 0.917973
Target:  5'- --gAgAGGUGcCAGCGccgGGCGucggcCCGCGCc -3'
miRNA:   3'- cgaUgUUCAC-GUCGCa--CCGC-----GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 190984 0.67 0.843283
Target:  5'- --aGCAGGcagcGCGGCGacGGCGUCGCGa -3'
miRNA:   3'- cgaUGUUCa---CGUCGCa-CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 190433 0.78 0.316693
Target:  5'- aGCaGCAGGUGCGacacgaaauacguGCGcGGCGUCGCGCc -3'
miRNA:   3'- -CGaUGUUCACGU-------------CGCaCCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 188267 0.8 0.229558
Target:  5'- aGCgGCGGGccggGUAGCGgaugcagGGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa---CGUCGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 185119 0.66 0.917973
Target:  5'- --aGCAuGUGCA-CGaccaggcGGCGCCGCGUc -3'
miRNA:   3'- cgaUGUuCACGUcGCa------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 185035 0.66 0.887222
Target:  5'- aGCUcCAAGUacggcagcaaCAGCGUGGUcugcaGCCGcCGCg -3'
miRNA:   3'- -CGAuGUUCAc---------GUCGCACCG-----CGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 184816 0.68 0.827103
Target:  5'- aGCgucACGGG-GCAcGCGUccgGGCGCacCGCGCa -3'
miRNA:   3'- -CGa--UGUUCaCGU-CGCA---CCGCG--GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184613 0.68 0.827103
Target:  5'- gGCaACGgccAGcgGCAGCGUccacgaucGGCGUCGCGUc -3'
miRNA:   3'- -CGaUGU---UCa-CGUCGCA--------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184485 0.68 0.827929
Target:  5'- cGC-GCGGGgccccggacgcccggGCGGCGcgGGCcCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa--------------CGUCGCa-CCGcGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 184419 0.66 0.906345
Target:  5'- cGCUcaccgGCAGGUGCAGacuGUacaucugaGcGCGCCGCuGCc -3'
miRNA:   3'- -CGA-----UGUUCACGUCg--CA--------C-CGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 183590 0.67 0.858728
Target:  5'- -aUAC-GGUgGgGGCGgaggGGgGCCGCGCg -3'
miRNA:   3'- cgAUGuUCA-CgUCGCa---CCgCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 182191 0.67 0.843283
Target:  5'- --aACGGGgccuCGGCGccGGCGUCGCGCc -3'
miRNA:   3'- cgaUGUUCac--GUCGCa-CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 181742 0.66 0.908743
Target:  5'- cGC-GCGAGcgGcCGGCcagcccgcugacgccGaUGGCGCCGCGCc -3'
miRNA:   3'- -CGaUGUUCa-C-GUCG---------------C-ACCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 179237 0.66 0.917973
Target:  5'- uGCaACAGGU-CGGCGUcGGCGagaCCGcCGCc -3'
miRNA:   3'- -CGaUGUUCAcGUCGCA-CCGC---GGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 176282 0.76 0.386098
Target:  5'- --aGCAAugGCAGCGaUGGCGCCGCGa -3'
miRNA:   3'- cgaUGUUcaCGUCGC-ACCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 169450 0.66 0.887222
Target:  5'- uGCUAC-GGUGCaacGGUGgguucggGGCGaCCGUGUc -3'
miRNA:   3'- -CGAUGuUCACG---UCGCa------CCGC-GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 167267 0.66 0.917973
Target:  5'- uCUGguGGUucGUAGCGuUGGCGaCGUGCg -3'
miRNA:   3'- cGAUguUCA--CGUCGC-ACCGCgGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.