miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 156024 0.68 0.801578
Target:  5'- --cAUggGUcGCAGcCGUcGCGUCGCGCg -3'
miRNA:   3'- cgaUGuuCA-CGUC-GCAcCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 153402 0.69 0.774731
Target:  5'- --cGCGAGcUGUcGCGa-GCGCCGCGCg -3'
miRNA:   3'- cgaUGUUC-ACGuCGCacCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 151563 0.68 0.810244
Target:  5'- uGCUGCugacGUAGCGccccccGGCGgCGCGCg -3'
miRNA:   3'- -CGAUGuucaCGUCGCa-----CCGCgGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 149785 0.68 0.801578
Target:  5'- gGCgUACGGGUGguGCGUGGauCUGgGUu -3'
miRNA:   3'- -CG-AUGUUCACguCGCACCgcGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 149208 0.67 0.858728
Target:  5'- aGCUAUccGgcugGCcggaAGCGaGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuuCa---CG----UCGCaCCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 147683 0.71 0.628641
Target:  5'- cGCU-CGAGgacccgGCGGCGaugcGGCGCaCGUGCg -3'
miRNA:   3'- -CGAuGUUCa-----CGUCGCa---CCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 145358 0.66 0.891861
Target:  5'- aGCUGgGGGUGUggucaccgGGCGgagacGcuccgcucgguggcGCGCCGCGCg -3'
miRNA:   3'- -CGAUgUUCACG--------UCGCa----C--------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 144970 0.66 0.906345
Target:  5'- gGCgccuCGacGGUGUcGCGaccGGCGCCGgGCg -3'
miRNA:   3'- -CGau--GU--UCACGuCGCa--CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 144432 0.79 0.25832
Target:  5'- uGCUGCGccgAGUGCAGcCGUGcGCGCaccuGCGCg -3'
miRNA:   3'- -CGAUGU---UCACGUC-GCAC-CGCGg---CGCG- -5'
11033 5' -57.1 NC_002794.1 + 143301 0.73 0.557985
Target:  5'- --gGCGGGUGCAGCGcGGCgggauggaagucgGUCGCGUg -3'
miRNA:   3'- cgaUGUUCACGUCGCaCCG-------------CGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 142400 0.73 0.568825
Target:  5'- cGgUGCAg--GCGGCGUcggcGGCGCCGgGCg -3'
miRNA:   3'- -CgAUGUucaCGUCGCA----CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 141634 0.67 0.858728
Target:  5'- aGCgACGGGaagGcCGGCGUGGCcgcgGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCa--C-GUCGCACCG----CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 141423 0.69 0.783814
Target:  5'- cCU-CGGGgGCGGCGggGGCGCCggggGCGCc -3'
miRNA:   3'- cGAuGUUCaCGUCGCa-CCGCGG----CGCG- -5'
11033 5' -57.1 NC_002794.1 + 139996 0.67 0.851101
Target:  5'- cGCgggAC-GGUGCGG-GUGGagGCCGCGg -3'
miRNA:   3'- -CGa--UGuUCACGUCgCACCg-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 138961 0.67 0.851101
Target:  5'- uGCUGCGAc-GCGGCGgacggguuggccUGGCGggcCUGCGCg -3'
miRNA:   3'- -CGAUGUUcaCGUCGC------------ACCGC---GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 138110 0.68 0.827103
Target:  5'- uCUGCAGGag-GGCGUGGUGCuCGuCGCc -3'
miRNA:   3'- cGAUGUUCacgUCGCACCGCG-GC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 137975 0.67 0.871959
Target:  5'- cCUGgGAGUugucgccGCAGCGcUGGUGCagcugggCGCGCa -3'
miRNA:   3'- cGAUgUUCA-------CGUCGC-ACCGCG-------GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 137617 0.7 0.731512
Target:  5'- cGCgGCGgcGGUGCccacgacgacguccuGGCG-GGCGCCGgGCc -3'
miRNA:   3'- -CGaUGU--UCACG---------------UCGCaCCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 135713 0.68 0.798949
Target:  5'- cGCU-CGAGcUGCuGCGUaGcaucugcaccugccGCGCCGCGCc -3'
miRNA:   3'- -CGAuGUUC-ACGuCGCA-C--------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 134267 0.71 0.658676
Target:  5'- --gACGcGUGCGGCGUGGUGUacggauacgaGCGCc -3'
miRNA:   3'- cgaUGUuCACGUCGCACCGCGg---------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.