miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 127966 0.66 0.900192
Target:  5'- gGCUACGagcgacccuGGUGguGUgGUGGUGuCUGgGCg -3'
miRNA:   3'- -CGAUGU---------UCACguCG-CACCGC-GGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 127343 0.67 0.866159
Target:  5'- cGCUGcCGAGacgcucGCGGCGgcGGCGCgGcCGCu -3'
miRNA:   3'- -CGAU-GUUCa-----CGUCGCa-CCGCGgC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 126255 0.7 0.738223
Target:  5'- cGC-GCGAGgucggcggcuggcugGCGGCGcugggcuugcUGuGCGCCGCGCg -3'
miRNA:   3'- -CGaUGUUCa--------------CGUCGC----------AC-CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 125928 0.7 0.727659
Target:  5'- cGCUGCucGUcgaGCAGUuccucGUGGcCGCCuGCGCg -3'
miRNA:   3'- -CGAUGuuCA---CGUCG-----CACC-GCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 123587 0.67 0.876223
Target:  5'- cGCcGCccGUGCAGCGUcccGgaacgccugugggacGCGCUGCGCg -3'
miRNA:   3'- -CGaUGuuCACGUCGCA---C---------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 123483 0.68 0.801578
Target:  5'- cGCUGCGGac-CAGCGUGGaccugugcauCGCCGgGCu -3'
miRNA:   3'- -CGAUGUUcacGUCGCACC----------GCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 121300 0.77 0.352852
Target:  5'- aGUUACAAcGUGCAgaucgGCGguuggcccucgaGGCGCCGCGCg -3'
miRNA:   3'- -CGAUGUU-CACGU-----CGCa-----------CCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 121038 0.69 0.774731
Target:  5'- ----gGAGaGCGGCGcgucgGGCGCCGCGa -3'
miRNA:   3'- cgaugUUCaCGUCGCa----CCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 120079 0.66 0.916287
Target:  5'- cGCgGC-GGUgGCGGCGacgaccgugccgagcGCGCCGCGCg -3'
miRNA:   3'- -CGaUGuUCA-CGUCGCac-------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 120032 0.67 0.85948
Target:  5'- --cGCGGGgacgucgucaugacgGCGGCgGUGGCGgCCGCGg -3'
miRNA:   3'- cgaUGUUCa--------------CGUCG-CACCGC-GGCGCg -5'
11033 5' -57.1 NC_002794.1 + 118881 0.69 0.783814
Target:  5'- aGCUGCAGGU-CGGCccGGUGuUCGCGUa -3'
miRNA:   3'- -CGAUGUUCAcGUCGcaCCGC-GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 118255 0.67 0.880411
Target:  5'- gGCUGgAGGUcgGCcggGGCGgcGGCGCCgGCGUc -3'
miRNA:   3'- -CGAUgUUCA--CG---UCGCa-CCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 117982 0.67 0.880411
Target:  5'- aGCUGguGGUaCAGCaggGGCuGCCGCGg -3'
miRNA:   3'- -CGAUguUCAcGUCGca-CCG-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 117510 0.66 0.893817
Target:  5'- ---uCAGGUGCuGgGU-GCGCCgGCGCa -3'
miRNA:   3'- cgauGUUCACGuCgCAcCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 117422 0.73 0.558968
Target:  5'- cGCUGCAGGagcUGCcGCGaGGCGuuGCGg -3'
miRNA:   3'- -CGAUGUUC---ACGuCGCaCCGCggCGCg -5'
11033 5' -57.1 NC_002794.1 + 115037 0.73 0.558968
Target:  5'- uCUGCAGGUGCgaccgGGCGgcgGGCGgCaGCGCc -3'
miRNA:   3'- cGAUGUUCACG-----UCGCa--CCGCgG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 114650 0.68 0.827103
Target:  5'- aGCUGCcGGUGCuGUuc-GCGCgCGCGCc -3'
miRNA:   3'- -CGAUGuUCACGuCGcacCGCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 114025 0.68 0.818755
Target:  5'- -gUACAGGcgggGCAGCGgccgcccguaGuCGCCGCGCa -3'
miRNA:   3'- cgAUGUUCa---CGUCGCac--------C-GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 113370 0.67 0.858728
Target:  5'- cGgaACGGGUGCGGgccgccguCGUgcaGGCGCUGCaGCa -3'
miRNA:   3'- -CgaUGUUCACGUC--------GCA---CCGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 113148 0.66 0.887222
Target:  5'- gGCggGCGcGU-CAGCGUGuaGCgCGCGCg -3'
miRNA:   3'- -CGa-UGUuCAcGUCGCACcgCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.