Results 1 - 20 of 144 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 190433 | 0.78 | 0.316693 |
Target: 5'- aGCaGCAGGUGCGacacgaaauacguGCGcGGCGUCGCGCc -3' miRNA: 3'- -CGaUGUUCACGU-------------CGCaCCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 47938 | 0.66 | 0.912273 |
Target: 5'- --------cGCAGaucGGCGCCGCGCg -3' miRNA: 3'- cgauguucaCGUCgcaCCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 181742 | 0.66 | 0.908743 |
Target: 5'- cGC-GCGAGcgGcCGGCcagcccgcugacgccGaUGGCGCCGCGCc -3' miRNA: 3'- -CGaUGUUCa-C-GUCG---------------C-ACCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 53054 | 0.66 | 0.906345 |
Target: 5'- gGCUccaGCGuagGCAGCGccGCGCCGCcaGCu -3' miRNA: 3'- -CGA---UGUucaCGUCGCacCGCGGCG--CG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 144970 | 0.66 | 0.906345 |
Target: 5'- gGCgccuCGacGGUGUcGCGaccGGCGCCGgGCg -3' miRNA: 3'- -CGau--GU--UCACGuCGCa--CCGCGGCgCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 184419 | 0.66 | 0.906345 |
Target: 5'- cGCUcaccgGCAGGUGCAGacuGUacaucugaGcGCGCCGCuGCc -3' miRNA: 3'- -CGA-----UGUUCACGUCg--CA--------C-CGCGGCG-CG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 70070 | 0.66 | 0.905739 |
Target: 5'- gGCcGCAGccGCAGCaaGGCgacgcagGCCGCGCa -3' miRNA: 3'- -CGaUGUUcaCGUCGcaCCG-------CGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 127966 | 0.66 | 0.900192 |
Target: 5'- gGCUACGagcgacccuGGUGguGUgGUGGUGuCUGgGCg -3' miRNA: 3'- -CGAUGU---------UCACguCG-CACCGC-GGCgCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 61871 | 0.66 | 0.900192 |
Target: 5'- cGCcGCGc--GCcGuCGUcGGCGCCGCGCg -3' miRNA: 3'- -CGaUGUucaCGuC-GCA-CCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 120079 | 0.66 | 0.916287 |
Target: 5'- cGCgGC-GGUgGCGGCGacgaccgugccgagcGCGCCGCGCg -3' miRNA: 3'- -CGaUGuUCA-CGUCGCac-------------CGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 111616 | 0.66 | 0.91458 |
Target: 5'- gGCcgGCGGGgccGCcGCGgccgccgccggucgGGCGCCGCGg -3' miRNA: 3'- -CGa-UGUUCa--CGuCGCa-------------CCGCGGCGCg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 167267 | 0.66 | 0.917973 |
Target: 5'- uCUGguGGUucGUAGCGuUGGCGaCGUGCg -3' miRNA: 3'- cGAUguUCA--CGUCGC-ACCGCgGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 195220 | 0.66 | 0.917973 |
Target: 5'- aGCUGCGGcaGCAGCcc-GCGCgGCGUc -3' miRNA: 3'- -CGAUGUUcaCGUCGcacCGCGgCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 87818 | 0.66 | 0.917973 |
Target: 5'- cCUACuAGcGC-GCGUGcGCGuauCCGCGCg -3' miRNA: 3'- cGAUGuUCaCGuCGCAC-CGC---GGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 37272 | 0.66 | 0.917973 |
Target: 5'- --gGCGGGcGC-GCG-GGCGCgGCGUa -3' miRNA: 3'- cgaUGUUCaCGuCGCaCCGCGgCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 191510 | 0.66 | 0.917973 |
Target: 5'- --gAgAGGUGcCAGCGccgGGCGucggcCCGCGCc -3' miRNA: 3'- cgaUgUUCAC-GUCGCa--CCGC-----GGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 11335 | 0.66 | 0.917973 |
Target: 5'- --aACGAGacGCAgGCGaucuccGGCGUCGCGCu -3' miRNA: 3'- cgaUGUUCa-CGU-CGCa-----CCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 185119 | 0.66 | 0.917973 |
Target: 5'- --aGCAuGUGCA-CGaccaggcGGCGCCGCGUc -3' miRNA: 3'- cgaUGUuCACGUcGCa------CCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 91319 | 0.66 | 0.917973 |
Target: 5'- uCUACuacGUGUucacGGCGcugggucaGGCGCUGCGCu -3' miRNA: 3'- cGAUGuu-CACG----UCGCa-------CCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 92424 | 0.66 | 0.917973 |
Target: 5'- aGCacggGCGAGgacacgcugGCcGUGcGGgGCCGCGCg -3' miRNA: 3'- -CGa---UGUUCa--------CGuCGCaCCgCGGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home