Results 61 - 80 of 144 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 61871 | 0.66 | 0.900192 |
Target: 5'- cGCcGCGc--GCcGuCGUcGGCGCCGCGCg -3' miRNA: 3'- -CGaUGUucaCGuC-GCA-CCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 67011 | 0.66 | 0.900192 |
Target: 5'- --gACGAGUccggcgGCGGCGgccGGCucccGCCGCGUc -3' miRNA: 3'- cgaUGUUCA------CGUCGCa--CCG----CGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 118255 | 0.67 | 0.880411 |
Target: 5'- gGCUGgAGGUcgGCcggGGCGgcGGCGCCgGCGUc -3' miRNA: 3'- -CGAUgUUCA--CG---UCGCa-CCGCGG-CGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 117982 | 0.67 | 0.880411 |
Target: 5'- aGCUGguGGUaCAGCaggGGCuGCCGCGg -3' miRNA: 3'- -CGAUguUCAcGUCGca-CCG-CGGCGCg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 90103 | 0.67 | 0.873389 |
Target: 5'- uCUGCGcc-GCGGUG-GGCGCCGUGa -3' miRNA: 3'- cGAUGUucaCGUCGCaCCGCGGCGCg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 123587 | 0.67 | 0.876223 |
Target: 5'- cGCcGCccGUGCAGCGUcccGgaacgccugugggacGCGCUGCGCg -3' miRNA: 3'- -CGaUGuuCACGUCGCA---C---------------CGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 99690 | 0.67 | 0.866159 |
Target: 5'- --cAUAAcUGC-GCGcUGGCGCCGCGg -3' miRNA: 3'- cgaUGUUcACGuCGC-ACCGCGGCGCg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 106237 | 0.67 | 0.869076 |
Target: 5'- cGCU-CGGGUcGCagaccgccgcgaaccGGCGa-GCGCCGCGCg -3' miRNA: 3'- -CGAuGUUCA-CG---------------UCGCacCGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 137975 | 0.67 | 0.871959 |
Target: 5'- cCUGgGAGUugucgccGCAGCGcUGGUGCagcugggCGCGCa -3' miRNA: 3'- cGAUgUUCA-------CGUCGC-ACCGCG-------GCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 37730 | 0.67 | 0.866159 |
Target: 5'- --cGCGAGcgGCGGCGccgccGGCGgCgGCGCg -3' miRNA: 3'- cgaUGUUCa-CGUCGCa----CCGC-GgCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 185035 | 0.66 | 0.887222 |
Target: 5'- aGCUcCAAGUacggcagcaaCAGCGUGGUcugcaGCCGcCGCg -3' miRNA: 3'- -CGAuGUUCAc---------GUCGCACCG-----CGGC-GCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 169450 | 0.66 | 0.887222 |
Target: 5'- uGCUAC-GGUGCaacGGUGgguucggGGCGaCCGUGUc -3' miRNA: 3'- -CGAUGuUCACG---UCGCa------CCGC-GGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 14693 | 0.66 | 0.900192 |
Target: 5'- cGCUGCuccUGaCGGCGUGGgGa-GCGCu -3' miRNA: 3'- -CGAUGuucAC-GUCGCACCgCggCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 87351 | 0.66 | 0.893817 |
Target: 5'- aGCaGCGGGUccggcggcgaGCGGCGUucugGGCGgCGCGg -3' miRNA: 3'- -CGaUGUUCA----------CGUCGCA----CCGCgGCGCg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 57151 | 0.66 | 0.893817 |
Target: 5'- uGCU-CAcGcUGCuGCGcaaGGCGCCGcCGCa -3' miRNA: 3'- -CGAuGUuC-ACGuCGCa--CCGCGGC-GCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 67419 | 0.66 | 0.893817 |
Target: 5'- gGCgccaGCGucgGCGGCGUGucGCGCCGCu- -3' miRNA: 3'- -CGa---UGUucaCGUCGCAC--CGCGGCGcg -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 117510 | 0.66 | 0.893817 |
Target: 5'- ---uCAGGUGCuGgGU-GCGCCgGCGCa -3' miRNA: 3'- cgauGUUCACGuCgCAcCGCGG-CGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 100371 | 0.66 | 0.891205 |
Target: 5'- aCUGCGAGguggccgacguccGCGGCGUGGacgaCGUgGCGUg -3' miRNA: 3'- cGAUGUUCa------------CGUCGCACC----GCGgCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 145358 | 0.66 | 0.891861 |
Target: 5'- aGCUGgGGGUGUggucaccgGGCGgagacGcuccgcucgguggcGCGCCGCGCg -3' miRNA: 3'- -CGAUgUUCACG--------UCGCa----C--------------CGCGGCGCG- -5' |
|||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 113148 | 0.66 | 0.887222 |
Target: 5'- gGCggGCGcGU-CAGCGUGuaGCgCGCGCg -3' miRNA: 3'- -CGa-UGUuCAcGUCGCACcgCG-GCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home