miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11033 5' -57.1 NC_002794.1 + 149208 0.67 0.858728
Target:  5'- aGCUAUccGgcugGCcggaAGCGaGGCGCCGcCGCc -3'
miRNA:   3'- -CGAUGuuCa---CG----UCGCaCCGCGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 44234 0.67 0.858728
Target:  5'- gGCUc--GGUGCcgGGCGgcucGGUGCCGgGCg -3'
miRNA:   3'- -CGAuguUCACG--UCGCa---CCGCGGCgCG- -5'
11033 5' -57.1 NC_002794.1 + 102150 0.67 0.858728
Target:  5'- cGCUucg---GCGGCGUGcGCGCCGgGg -3'
miRNA:   3'- -CGAuguucaCGUCGCAC-CGCGGCgCg -5'
11033 5' -57.1 NC_002794.1 + 113370 0.67 0.858728
Target:  5'- cGgaACGGGUGCGGgccgccguCGUgcaGGCGCUGCaGCa -3'
miRNA:   3'- -CgaUGUUCACGUC--------GCA---CCGCGGCG-CG- -5'
11033 5' -57.1 NC_002794.1 + 141634 0.67 0.858728
Target:  5'- aGCgACGGGaagGcCGGCGUGGCcgcgGCCGCcgGCg -3'
miRNA:   3'- -CGaUGUUCa--C-GUCGCACCG----CGGCG--CG- -5'
11033 5' -57.1 NC_002794.1 + 183590 0.67 0.858728
Target:  5'- -aUAC-GGUgGgGGCGgaggGGgGCCGCGCg -3'
miRNA:   3'- cgAUGuUCA-CgUCGCa---CCgCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 94816 0.67 0.850327
Target:  5'- cGCUacuaccgGCGGGUGCuGCGgcUGGacCGCUGUGCc -3'
miRNA:   3'- -CGA-------UGUUCACGuCGC--ACC--GCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 37730 0.67 0.866159
Target:  5'- --cGCGAGcgGCGGCGccgccGGCGgCgGCGCg -3'
miRNA:   3'- cgaUGUUCa-CGUCGCa----CCGC-GgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 137975 0.67 0.871959
Target:  5'- cCUGgGAGUugucgccGCAGCGcUGGUGCagcugggCGCGCa -3'
miRNA:   3'- cGAUgUUCA-------CGUCGC-ACCGCG-------GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 106237 0.67 0.869076
Target:  5'- cGCU-CGGGUcGCagaccgccgcgaaccGGCGa-GCGCCGCGCg -3'
miRNA:   3'- -CGAuGUUCA-CG---------------UCGCacCGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 100371 0.66 0.891205
Target:  5'- aCUGCGAGguggccgacguccGCGGCGUGGacgaCGUgGCGUg -3'
miRNA:   3'- cGAUGUUCa------------CGUCGCACC----GCGgCGCG- -5'
11033 5' -57.1 NC_002794.1 + 145358 0.66 0.891861
Target:  5'- aGCUGgGGGUGUggucaccgGGCGgagacGcuccgcucgguggcGCGCCGCGCg -3'
miRNA:   3'- -CGAUgUUCACG--------UCGCa----C--------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 113148 0.66 0.887222
Target:  5'- gGCggGCGcGU-CAGCGUGuaGCgCGCGCg -3'
miRNA:   3'- -CGa-UGUuCAcGUCGCACcgCG-GCGCG- -5'
11033 5' -57.1 NC_002794.1 + 169450 0.66 0.887222
Target:  5'- uGCUAC-GGUGCaacGGUGgguucggGGCGaCCGUGUc -3'
miRNA:   3'- -CGAUGuUCACG---UCGCa------CCGC-GGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 185035 0.66 0.887222
Target:  5'- aGCUcCAAGUacggcagcaaCAGCGUGGUcugcaGCCGcCGCg -3'
miRNA:   3'- -CGAuGUUCAc---------GUCGCACCG-----CGGC-GCG- -5'
11033 5' -57.1 NC_002794.1 + 118255 0.67 0.880411
Target:  5'- gGCUGgAGGUcgGCcggGGCGgcGGCGCCgGCGUc -3'
miRNA:   3'- -CGAUgUUCA--CG---UCGCa-CCGCGG-CGCG- -5'
11033 5' -57.1 NC_002794.1 + 117982 0.67 0.880411
Target:  5'- aGCUGguGGUaCAGCaggGGCuGCCGCGg -3'
miRNA:   3'- -CGAUguUCAcGUCGca-CCG-CGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 90103 0.67 0.873389
Target:  5'- uCUGCGcc-GCGGUG-GGCGCCGUGa -3'
miRNA:   3'- cGAUGUucaCGUCGCaCCGCGGCGCg -5'
11033 5' -57.1 NC_002794.1 + 123587 0.67 0.876223
Target:  5'- cGCcGCccGUGCAGCGUcccGgaacgccugugggacGCGCUGCGCg -3'
miRNA:   3'- -CGaUGuuCACGUCGCA---C---------------CGCGGCGCG- -5'
11033 5' -57.1 NC_002794.1 + 99690 0.67 0.866159
Target:  5'- --cAUAAcUGC-GCGcUGGCGCCGCGg -3'
miRNA:   3'- cgaUGUUcACGuCGC-ACCGCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.