Results 41 - 60 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11033 | 5' | -57.1 | NC_002794.1 | + | 11335 | 0.66 | 0.917973 |
Target: 5'- --aACGAGacGCAgGCGaucuccGGCGUCGCGCu -3' miRNA: 3'- cgaUGUUCa-CGU-CGCa-----CCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 191510 | 0.66 | 0.917973 |
Target: 5'- --gAgAGGUGcCAGCGccgGGCGucggcCCGCGCc -3' miRNA: 3'- cgaUgUUCAC-GUCGCa--CCGC-----GGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 37272 | 0.66 | 0.917973 |
Target: 5'- --gGCGGGcGC-GCG-GGCGCgGCGUa -3' miRNA: 3'- cgaUGUUCaCGuCGCaCCGCGgCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 87818 | 0.66 | 0.917973 |
Target: 5'- cCUACuAGcGC-GCGUGcGCGuauCCGCGCg -3' miRNA: 3'- cGAUGuUCaCGuCGCAC-CGC---GGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 195220 | 0.66 | 0.917973 |
Target: 5'- aGCUGCGGcaGCAGCcc-GCGCgGCGUc -3' miRNA: 3'- -CGAUGUUcaCGUCGcacCGCGgCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 53054 | 0.66 | 0.906345 |
Target: 5'- gGCUccaGCGuagGCAGCGccGCGCCGCcaGCu -3' miRNA: 3'- -CGA---UGUucaCGUCGCacCGCGGCG--CG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 144970 | 0.66 | 0.906345 |
Target: 5'- gGCgccuCGacGGUGUcGCGaccGGCGCCGgGCg -3' miRNA: 3'- -CGau--GU--UCACGuCGCa--CCGCGGCgCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 113148 | 0.66 | 0.887222 |
Target: 5'- gGCggGCGcGU-CAGCGUGuaGCgCGCGCg -3' miRNA: 3'- -CGa-UGUuCAcGUCGCACcgCG-GCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 145358 | 0.66 | 0.891861 |
Target: 5'- aGCUGgGGGUGUggucaccgGGCGgagacGcuccgcucgguggcGCGCCGCGCg -3' miRNA: 3'- -CGAUgUUCACG--------UCGCa----C--------------CGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 100371 | 0.66 | 0.891205 |
Target: 5'- aCUGCGAGguggccgacguccGCGGCGUGGacgaCGUgGCGUg -3' miRNA: 3'- cGAUGUUCa------------CGUCGCACC----GCGgCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 117510 | 0.66 | 0.893817 |
Target: 5'- ---uCAGGUGCuGgGU-GCGCCgGCGCa -3' miRNA: 3'- cgauGUUCACGuCgCAcCGCGG-CGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 67419 | 0.66 | 0.893817 |
Target: 5'- gGCgccaGCGucgGCGGCGUGucGCGCCGCu- -3' miRNA: 3'- -CGa---UGUucaCGUCGCAC--CGCGGCGcg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 57151 | 0.66 | 0.893817 |
Target: 5'- uGCU-CAcGcUGCuGCGcaaGGCGCCGcCGCa -3' miRNA: 3'- -CGAuGUuC-ACGuCGCa--CCGCGGC-GCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 87351 | 0.66 | 0.893817 |
Target: 5'- aGCaGCGGGUccggcggcgaGCGGCGUucugGGCGgCGCGg -3' miRNA: 3'- -CGaUGUUCA----------CGUCGCA----CCGCgGCGCg -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 14693 | 0.66 | 0.900192 |
Target: 5'- cGCUGCuccUGaCGGCGUGGgGa-GCGCu -3' miRNA: 3'- -CGAUGuucAC-GUCGCACCgCggCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 67011 | 0.66 | 0.900192 |
Target: 5'- --gACGAGUccggcgGCGGCGgccGGCucccGCCGCGUc -3' miRNA: 3'- cgaUGUUCA------CGUCGCa--CCG----CGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 61871 | 0.66 | 0.900192 |
Target: 5'- cGCcGCGc--GCcGuCGUcGGCGCCGCGCg -3' miRNA: 3'- -CGaUGUucaCGuC-GCA-CCGCGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 127966 | 0.66 | 0.900192 |
Target: 5'- gGCUACGagcgacccuGGUGguGUgGUGGUGuCUGgGCg -3' miRNA: 3'- -CGAUGU---------UCACguCG-CACCGC-GGCgCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 70070 | 0.66 | 0.905739 |
Target: 5'- gGCcGCAGccGCAGCaaGGCgacgcagGCCGCGCa -3' miRNA: 3'- -CGaUGUUcaCGUCGcaCCG-------CGGCGCG- -5' |
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11033 | 5' | -57.1 | NC_002794.1 | + | 184419 | 0.66 | 0.906345 |
Target: 5'- cGCUcaccgGCAGGUGCAGacuGUacaucugaGcGCGCCGCuGCc -3' miRNA: 3'- -CGA-----UGUUCACGUCg--CA--------C-CGCGGCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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