miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11034 3' -52.9 NC_002794.1 + 73632 0.66 0.988829
Target:  5'- -aCGa--CGCAccACGACCUGuGGCUGGu -3'
miRNA:   3'- gaGCacgGCGU--UGUUGGACuUCGACC- -5'
11034 3' -52.9 NC_002794.1 + 34571 0.66 0.988829
Target:  5'- cCUCGUGUCGauccuGCGGCUgcccGAGUUGGa -3'
miRNA:   3'- -GAGCACGGCgu---UGUUGGac--UUCGACC- -5'
11034 3' -52.9 NC_002794.1 + 33453 0.66 0.988688
Target:  5'- cCUCGggcgGCCGCcgGACGcgcccacGCCgcUGcAGCUGGg -3'
miRNA:   3'- -GAGCa---CGGCG--UUGU-------UGG--ACuUCGACC- -5'
11034 3' -52.9 NC_002794.1 + 42204 0.66 0.987356
Target:  5'- aCUCGccGCCGC--CggUCUGccGCUGGa -3'
miRNA:   3'- -GAGCa-CGGCGuuGuuGGACuuCGACC- -5'
11034 3' -52.9 NC_002794.1 + 129053 0.66 0.987356
Target:  5'- gUCGUgGCgCGCGACggUgUGucgcGGCUGGc -3'
miRNA:   3'- gAGCA-CG-GCGUUGuuGgACu---UCGACC- -5'
11034 3' -52.9 NC_002794.1 + 56154 0.66 0.983965
Target:  5'- -gCGUGCCGCAGCGGCa-GcGGCcccGGu -3'
miRNA:   3'- gaGCACGGCGUUGUUGgaCuUCGa--CC- -5'
11034 3' -52.9 NC_002794.1 + 29227 0.66 0.983965
Target:  5'- gUCG-GCCGCcgAGCAGagaUGAAGCUGc -3'
miRNA:   3'- gAGCaCGGCG--UUGUUgg-ACUUCGACc -5'
11034 3' -52.9 NC_002794.1 + 91909 0.66 0.983965
Target:  5'- ----cGCCGCAGC-ACCUGGc-CUGGg -3'
miRNA:   3'- gagcaCGGCGUUGuUGGACUucGACC- -5'
11034 3' -52.9 NC_002794.1 + 90723 0.66 0.983965
Target:  5'- -aCGUGCuCGCGGC--CCUGucGCUGu -3'
miRNA:   3'- gaGCACG-GCGUUGuuGGACuuCGACc -5'
11034 3' -52.9 NC_002794.1 + 94541 0.66 0.983965
Target:  5'- -gUGUGUucgaaaUGCAACGaguguGCCaUGGAGCUGGa -3'
miRNA:   3'- gaGCACG------GCGUUGU-----UGG-ACUUCGACC- -5'
11034 3' -52.9 NC_002794.1 + 82102 0.66 0.983965
Target:  5'- cCUCGUcuGCCGCccccGCAGCCUccucGGCgUGGg -3'
miRNA:   3'- -GAGCA--CGGCGu---UGUUGGAcu--UCG-ACC- -5'
11034 3' -52.9 NC_002794.1 + 114277 0.66 0.983965
Target:  5'- gUCGUGCUGCAcCAGCCguucGCUcaGGu -3'
miRNA:   3'- gAGCACGGCGUuGUUGGacuuCGA--CC- -5'
11034 3' -52.9 NC_002794.1 + 94129 0.66 0.983779
Target:  5'- gUCGUGuuggaagguccgaCCGCGGCGGCgCUGGAcGgUGGg -3'
miRNA:   3'- gAGCAC-------------GGCGUUGUUG-GACUU-CgACC- -5'
11034 3' -52.9 NC_002794.1 + 150629 0.66 0.983402
Target:  5'- gCUCGUgagccaguaucccgGCaCGCGcguCGACCUG-GGCUGGc -3'
miRNA:   3'- -GAGCA--------------CG-GCGUu--GUUGGACuUCGACC- -5'
11034 3' -52.9 NC_002794.1 + 117338 0.66 0.982031
Target:  5'- ----cGCCGCAGCGAgCUGAGcacgaucucGUUGGa -3'
miRNA:   3'- gagcaCGGCGUUGUUgGACUU---------CGACC- -5'
11034 3' -52.9 NC_002794.1 + 147490 0.67 0.980789
Target:  5'- uUCGagcugGCCGagAGCuucaccgaguuccucGGCCUGggGCUGGu -3'
miRNA:   3'- gAGCa----CGGCg-UUG---------------UUGGACuuCGACC- -5'
11034 3' -52.9 NC_002794.1 + 127523 0.67 0.979926
Target:  5'- -cUGUGCCGCcGCGAUCcu--GCUGGc -3'
miRNA:   3'- gaGCACGGCGuUGUUGGacuuCGACC- -5'
11034 3' -52.9 NC_002794.1 + 150787 0.67 0.979926
Target:  5'- gCUCGUGCgacuccaggcccCGCGGCGgacggccgaGCCgcUGGAGCUGa -3'
miRNA:   3'- -GAGCACG------------GCGUUGU---------UGG--ACUUCGACc -5'
11034 3' -52.9 NC_002794.1 + 112846 0.67 0.979926
Target:  5'- gCUCGUcggcgcGCCGCAGCAGCUgcUGcAGCg-- -3'
miRNA:   3'- -GAGCA------CGGCGUUGUUGG--ACuUCGacc -5'
11034 3' -52.9 NC_002794.1 + 149687 0.67 0.977643
Target:  5'- gCUCGacugGCCGCGgggGCcGCCUGGcGGgUGGg -3'
miRNA:   3'- -GAGCa---CGGCGU---UGuUGGACU-UCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.