miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11034 5' -59.4 NC_002794.1 + 114613 0.66 0.748335
Target:  5'- uUCCAGgUGGCGCagcagguccucGGCGCggAGCUCg- -3'
miRNA:   3'- uAGGUCgACUGCGa----------CCGCG--UCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 102445 0.66 0.748335
Target:  5'- uGUCCgAGCUGACGCUcgaggagaugcGGCGCgucGGCg--- -3'
miRNA:   3'- -UAGG-UCGACUGCGA-----------CCGCG---UCGagaa -5'
11034 5' -59.4 NC_002794.1 + 60159 0.66 0.748335
Target:  5'- uUCCAGCUGcccaacagcccGCGCgGGCGCucGGC-CUg -3'
miRNA:   3'- uAGGUCGAC-----------UGCGaCCGCG--UCGaGAa -5'
11034 5' -59.4 NC_002794.1 + 51379 0.66 0.738688
Target:  5'- cGUCCGGCcGGCGaCaGGCGCccuccgGGCUCa- -3'
miRNA:   3'- -UAGGUCGaCUGC-GaCCGCG------UCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 154270 0.66 0.728948
Target:  5'- gGUCUGGUcccGAcCGCcGGCGCGGCUCg- -3'
miRNA:   3'- -UAGGUCGa--CU-GCGaCCGCGUCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 124531 0.67 0.719126
Target:  5'- -gCC-GCcGACGCUGGCGCuGCggCUg -3'
miRNA:   3'- uaGGuCGaCUGCGACCGCGuCGa-GAa -5'
11034 5' -59.4 NC_002794.1 + 18919 0.67 0.66909
Target:  5'- -cCCGGaCUGGCGCUGGauCGGUUCg- -3'
miRNA:   3'- uaGGUC-GACUGCGACCgcGUCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 44214 0.67 0.66909
Target:  5'- cGUCCGGCUcgGGCGCcgagGGCucggugccggGCGGCUCg- -3'
miRNA:   3'- -UAGGUCGA--CUGCGa---CCG----------CGUCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 122599 0.67 0.666054
Target:  5'- -aCgGGCUGGCGCUGagccugaacgucacGCGCGGCUa-- -3'
miRNA:   3'- uaGgUCGACUGCGAC--------------CGCGUCGAgaa -5'
11034 5' -59.4 NC_002794.1 + 188891 0.68 0.658959
Target:  5'- -gCCAGCaGugGCgGGC-CAGCUCg- -3'
miRNA:   3'- uaGGUCGaCugCGaCCGcGUCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 144990 0.68 0.648807
Target:  5'- -aCCGGCgccgGGCGUccgccUGGCGCAGCagCUg -3'
miRNA:   3'- uaGGUCGa---CUGCG-----ACCGCGUCGa-GAa -5'
11034 5' -59.4 NC_002794.1 + 37269 0.68 0.648807
Target:  5'- -gUCGGCgGGCGCgcgGGCGCGGCg--- -3'
miRNA:   3'- uaGGUCGaCUGCGa--CCGCGUCGagaa -5'
11034 5' -59.4 NC_002794.1 + 111747 0.68 0.608148
Target:  5'- cGUCgAGCUGGCGCcgcgcGGCGCcgucggggcgGGCUCg- -3'
miRNA:   3'- -UAGgUCGACUGCGa----CCGCG----------UCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 154201 0.71 0.434243
Target:  5'- gAUCUGGa-GACGCUGGCGCGGCa--- -3'
miRNA:   3'- -UAGGUCgaCUGCGACCGCGUCGagaa -5'
11034 5' -59.4 NC_002794.1 + 118720 0.72 0.41664
Target:  5'- -gCCAGCUG-CGCguacugGGCGCuGCUCg- -3'
miRNA:   3'- uaGGUCGACuGCGa-----CCGCGuCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 58379 0.72 0.399481
Target:  5'- uUCCAGgaGGCGCgcgGGCGcCAGCUgCUg -3'
miRNA:   3'- uAGGUCgaCUGCGa--CCGC-GUCGA-GAa -5'
11034 5' -59.4 NC_002794.1 + 147797 0.72 0.391072
Target:  5'- cGUCUcggAGCUGACGCUGaaGCGGCUCc- -3'
miRNA:   3'- -UAGG---UCGACUGCGACcgCGUCGAGaa -5'
11034 5' -59.4 NC_002794.1 + 111039 0.73 0.350799
Target:  5'- gAUCCGGCUGGC---GGUGCAGCUCg- -3'
miRNA:   3'- -UAGGUCGACUGcgaCCGCGUCGAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.