miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 68972 0.66 0.959172
Target:  5'- -cUCCGCgggCCGCga-CGCCGGCGuCGa -3'
miRNA:   3'- gaAGGUGaa-GGUGagcGUGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 37265 0.66 0.959172
Target:  5'- -cUCCG--UCgGCgggCGCGCgGGCGCGg -3'
miRNA:   3'- gaAGGUgaAGgUGa--GCGUGgCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 65046 0.66 0.959172
Target:  5'- -cUCCGCUaCCAcCUCGaccuUCGGCACc -3'
miRNA:   3'- gaAGGUGAaGGU-GAGCgu--GGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 62325 0.66 0.959172
Target:  5'- --aCCGCcccUCGCUggcggagccCGCGCCGGCGCa -3'
miRNA:   3'- gaaGGUGaa-GGUGA---------GCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 34975 0.66 0.955492
Target:  5'- -gUCC-CUggCCACgaaacUGCGCCGGCuGCGg -3'
miRNA:   3'- gaAGGuGAa-GGUGa----GCGUGGCCG-UGC- -5'
11036 3' -55.6 NC_002794.1 + 58692 0.66 0.955492
Target:  5'- --aCCGCcagCUGCUCGgGCUGGUGCGc -3'
miRNA:   3'- gaaGGUGaa-GGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 79895 0.66 0.955492
Target:  5'- -gUCCACUacaUCUAcCUCGCcuACC-GCACGg -3'
miRNA:   3'- gaAGGUGA---AGGU-GAGCG--UGGcCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 82795 0.66 0.955492
Target:  5'- --gCCGCgUCCACgCGCGCCGcgaccCGCGg -3'
miRNA:   3'- gaaGGUGaAGGUGaGCGUGGCc----GUGC- -5'
11036 3' -55.6 NC_002794.1 + 125331 0.66 0.955492
Target:  5'- --gCCggaGCgcgCCACggCGCACCGGCAg- -3'
miRNA:   3'- gaaGG---UGaa-GGUGa-GCGUGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 71930 0.66 0.955112
Target:  5'- --aCgACUUCCAggucgcgcagcucCUCGCcgacguACCGGCGCa -3'
miRNA:   3'- gaaGgUGAAGGU-------------GAGCG------UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 116336 0.66 0.951593
Target:  5'- -gUCCAgCUguUCgCACUCGUACaCGGCcgcGCGg -3'
miRNA:   3'- gaAGGU-GA--AG-GUGAGCGUG-GCCG---UGC- -5'
11036 3' -55.6 NC_002794.1 + 12502 0.66 0.951593
Target:  5'- gUUCC-CgagCCGCUCG-ACCGGCGg- -3'
miRNA:   3'- gAAGGuGaa-GGUGAGCgUGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 102142 0.66 0.951593
Target:  5'- uCUUCgugCGCUUCgGCggcgugCGCGCCGGgGCc -3'
miRNA:   3'- -GAAG---GUGAAGgUGa-----GCGUGGCCgUGc -5'
11036 3' -55.6 NC_002794.1 + 92182 0.66 0.951593
Target:  5'- --gCCGCUUCCugUgcgacgucgaCGUGCuCGGCACc -3'
miRNA:   3'- gaaGGUGAAGGugA----------GCGUG-GCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 59941 0.66 0.951593
Target:  5'- uCUUCCGCgucuuccCCAUgcaCGUcuACCGGCACc -3'
miRNA:   3'- -GAAGGUGaa-----GGUGa--GCG--UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 193414 0.66 0.947895
Target:  5'- -cUCCGCcgCCGC-CGCccgucguccagccguCCGGCACGc -3'
miRNA:   3'- gaAGGUGaaGGUGaGCGu--------------GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 131246 0.66 0.947472
Target:  5'- --cCCGCcgCCGgaCGcCGCCGGCACc -3'
miRNA:   3'- gaaGGUGaaGGUgaGC-GUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 53240 0.66 0.947472
Target:  5'- -gUCCuCggcCCGC-CGCGCCGGCGuCGc -3'
miRNA:   3'- gaAGGuGaa-GGUGaGCGUGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 30064 0.66 0.947472
Target:  5'- --cCCGCggggUCCGgUCGC-CCGGUcgACGa -3'
miRNA:   3'- gaaGGUGa---AGGUgAGCGuGGCCG--UGC- -5'
11036 3' -55.6 NC_002794.1 + 188596 0.66 0.947472
Target:  5'- -cUCCACggCCGcCUUGCGCCGcagguGUGCGa -3'
miRNA:   3'- gaAGGUGaaGGU-GAGCGUGGC-----CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.