Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11036 | 3' | -55.6 | NC_002794.1 | + | 81798 | 0.66 | 0.943126 |
Target: 5'- uUUCCGCUgccucagCCGCgCGCACCG-CAUc -3' miRNA: 3'- gAAGGUGAa------GGUGaGCGUGGCcGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 102142 | 0.66 | 0.951593 |
Target: 5'- uCUUCgugCGCUUCgGCggcgugCGCGCCGGgGCc -3' miRNA: 3'- -GAAG---GUGAAGgUGa-----GCGUGGCCgUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 92182 | 0.66 | 0.951593 |
Target: 5'- --gCCGCUUCCugUgcgacgucgaCGUGCuCGGCACc -3' miRNA: 3'- gaaGGUGAAGGugA----------GCGUG-GCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 59941 | 0.66 | 0.951593 |
Target: 5'- uCUUCCGCgucuuccCCAUgcaCGUcuACCGGCACc -3' miRNA: 3'- -GAAGGUGaa-----GGUGa--GCG--UGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 188596 | 0.66 | 0.947472 |
Target: 5'- -cUCCACggCCGcCUUGCGCCGcagguGUGCGa -3' miRNA: 3'- gaAGGUGaaGGU-GAGCGUGGC-----CGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 30064 | 0.66 | 0.947472 |
Target: 5'- --cCCGCggggUCCGgUCGC-CCGGUcgACGa -3' miRNA: 3'- gaaGGUGa---AGGUgAGCGuGGCCG--UGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 193414 | 0.66 | 0.947895 |
Target: 5'- -cUCCGCcgCCGC-CGCccgucguccagccguCCGGCACGc -3' miRNA: 3'- gaAGGUGaaGGUGaGCGu--------------GGCCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 53240 | 0.66 | 0.947472 |
Target: 5'- -gUCCuCggcCCGC-CGCGCCGGCGuCGc -3' miRNA: 3'- gaAGGuGaa-GGUGaGCGUGGCCGU-GC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 131246 | 0.66 | 0.947472 |
Target: 5'- --cCCGCcgCCGgaCGcCGCCGGCACc -3' miRNA: 3'- gaaGGUGaaGGUgaGC-GUGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 12502 | 0.66 | 0.951593 |
Target: 5'- gUUCC-CgagCCGCUCG-ACCGGCGg- -3' miRNA: 3'- gAAGGuGaa-GGUGAGCgUGGCCGUgc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 71930 | 0.66 | 0.955112 |
Target: 5'- --aCgACUUCCAggucgcgcagcucCUCGCcgacguACCGGCGCa -3' miRNA: 3'- gaaGgUGAAGGU-------------GAGCG------UGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 116336 | 0.66 | 0.951593 |
Target: 5'- -gUCCAgCUguUCgCACUCGUACaCGGCcgcGCGg -3' miRNA: 3'- gaAGGU-GA--AG-GUGAGCGUG-GCCG---UGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 37265 | 0.66 | 0.959172 |
Target: 5'- -cUCCG--UCgGCgggCGCGCgGGCGCGg -3' miRNA: 3'- gaAGGUgaAGgUGa--GCGUGgCCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 65046 | 0.66 | 0.959172 |
Target: 5'- -cUCCGCUaCCAcCUCGaccuUCGGCACc -3' miRNA: 3'- gaAGGUGAaGGU-GAGCgu--GGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 62325 | 0.66 | 0.959172 |
Target: 5'- --aCCGCcccUCGCUggcggagccCGCGCCGGCGCa -3' miRNA: 3'- gaaGGUGaa-GGUGA---------GCGUGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 125331 | 0.66 | 0.955492 |
Target: 5'- --gCCggaGCgcgCCACggCGCACCGGCAg- -3' miRNA: 3'- gaaGG---UGaa-GGUGa-GCGUGGCCGUgc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 82795 | 0.66 | 0.955492 |
Target: 5'- --gCCGCgUCCACgCGCGCCGcgaccCGCGg -3' miRNA: 3'- gaaGGUGaAGGUGaGCGUGGCc----GUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 79895 | 0.66 | 0.955492 |
Target: 5'- -gUCCACUacaUCUAcCUCGCcuACC-GCACGg -3' miRNA: 3'- gaAGGUGA---AGGU-GAGCG--UGGcCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 58692 | 0.66 | 0.955492 |
Target: 5'- --aCCGCcagCUGCUCGgGCUGGUGCGc -3' miRNA: 3'- gaaGGUGaa-GGUGAGCgUGGCCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 34975 | 0.66 | 0.955492 |
Target: 5'- -gUCC-CUggCCACgaaacUGCGCCGGCuGCGg -3' miRNA: 3'- gaAGGuGAa-GGUGa----GCGUGGCCG-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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