Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11036 | 3' | -55.6 | NC_002794.1 | + | 82795 | 0.66 | 0.955492 |
Target: 5'- --gCCGCgUCCACgCGCGCCGcgaccCGCGg -3' miRNA: 3'- gaaGGUGaAGGUGaGCGUGGCc----GUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 79895 | 0.66 | 0.955492 |
Target: 5'- -gUCCACUacaUCUAcCUCGCcuACC-GCACGg -3' miRNA: 3'- gaAGGUGA---AGGU-GAGCG--UGGcCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 58692 | 0.66 | 0.955492 |
Target: 5'- --aCCGCcagCUGCUCGgGCUGGUGCGc -3' miRNA: 3'- gaaGGUGaa-GGUGAGCgUGGCCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 34975 | 0.66 | 0.955492 |
Target: 5'- -gUCC-CUggCCACgaaacUGCGCCGGCuGCGg -3' miRNA: 3'- gaAGGuGAa-GGUGa----GCGUGGCCG-UGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 116336 | 0.66 | 0.951593 |
Target: 5'- -gUCCAgCUguUCgCACUCGUACaCGGCcgcGCGg -3' miRNA: 3'- gaAGGU-GA--AG-GUGAGCGUG-GCCG---UGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 71930 | 0.66 | 0.955112 |
Target: 5'- --aCgACUUCCAggucgcgcagcucCUCGCcgacguACCGGCGCa -3' miRNA: 3'- gaaGgUGAAGGU-------------GAGCG------UGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 12502 | 0.66 | 0.951593 |
Target: 5'- gUUCC-CgagCCGCUCG-ACCGGCGg- -3' miRNA: 3'- gAAGGuGaa-GGUGAGCgUGGCCGUgc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 102142 | 0.66 | 0.951593 |
Target: 5'- uCUUCgugCGCUUCgGCggcgugCGCGCCGGgGCc -3' miRNA: 3'- -GAAG---GUGAAGgUGa-----GCGUGGCCgUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 47949 | 0.67 | 0.923449 |
Target: 5'- --gCCGCgcgUCC-Cg-GCGCCGGCugGg -3' miRNA: 3'- gaaGGUGa--AGGuGagCGUGGCCGugC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 108203 | 0.67 | 0.917953 |
Target: 5'- ---gCGCUgcgCCGC-CGCGCCGGCcucGCGc -3' miRNA: 3'- gaagGUGAa--GGUGaGCGUGGCCG---UGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 127482 | 0.67 | 0.917953 |
Target: 5'- --aCCACcgCCGCUCuGCGCCGGgAa- -3' miRNA: 3'- gaaGGUGaaGGUGAG-CGUGGCCgUgc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 100089 | 0.67 | 0.917953 |
Target: 5'- uCUUCCACgUCCGCgugcggcgcgUGCAgCGGUGCu -3' miRNA: 3'- -GAAGGUGaAGGUGa---------GCGUgGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 99802 | 0.67 | 0.917953 |
Target: 5'- ---gCGCgcgCCGCggGCGCCGGCGCc -3' miRNA: 3'- gaagGUGaa-GGUGagCGUGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 179819 | 0.67 | 0.923449 |
Target: 5'- uCUUCCGCg--CACUCGUcgGCCucggucagcguGGCGCGg -3' miRNA: 3'- -GAAGGUGaagGUGAGCG--UGG-----------CCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 190190 | 0.67 | 0.923449 |
Target: 5'- --gCCACcUCCACgcgcuccaGCGCCGcGCGCa -3' miRNA: 3'- gaaGGUGaAGGUGag------CGUGGC-CGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 127587 | 0.67 | 0.928714 |
Target: 5'- --aCgGCUUUCACUCuGCGCggccgcugagCGGCGCGg -3' miRNA: 3'- gaaGgUGAAGGUGAG-CGUG----------GCCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 107197 | 0.67 | 0.928714 |
Target: 5'- --gCCGCcgCCGgcCUCGC-CCGGCGCc -3' miRNA: 3'- gaaGGUGaaGGU--GAGCGuGGCCGUGc -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 193298 | 0.67 | 0.928714 |
Target: 5'- --gUCGCcgUCCGCUcCGCGCC-GCACGc -3' miRNA: 3'- gaaGGUGa-AGGUGA-GCGUGGcCGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 148527 | 0.67 | 0.933748 |
Target: 5'- gCUgcgCCGCUUCCcgugcCUCGUcgGCUGcGCGCGg -3' miRNA: 3'- -GAa--GGUGAAGGu----GAGCG--UGGC-CGUGC- -5' |
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11036 | 3' | -55.6 | NC_002794.1 | + | 134174 | 0.67 | 0.917953 |
Target: 5'- --gCCGCgcggauggCCAcCUCGUAUCGGCugGu -3' miRNA: 3'- gaaGGUGaa------GGU-GAGCGUGGCCGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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