miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 102493 0.79 0.322452
Target:  5'- gCUUCCACgUCCugUUGCAgCGGCugGc -3'
miRNA:   3'- -GAAGGUGaAGGugAGCGUgGCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 190261 0.76 0.499113
Target:  5'- -cUCCGCUUCCAgUCGCacgcGCCGGUAg- -3'
miRNA:   3'- gaAGGUGAAGGUgAGCG----UGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 92856 0.75 0.518211
Target:  5'- aCUUCgCGCUcuacgCCGCcUCGgGCCGGCACGu -3'
miRNA:   3'- -GAAG-GUGAa----GGUG-AGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 103947 0.75 0.518211
Target:  5'- --gCCGCcgCCGCUCGCcagccGCCGGCGCu -3'
miRNA:   3'- gaaGGUGaaGGUGAGCG-----UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 22579 0.75 0.537593
Target:  5'- --gCCGCUgUCCAagUCGCGCuCGGCACGg -3'
miRNA:   3'- gaaGGUGA-AGGUg-AGCGUG-GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 110855 0.75 0.547378
Target:  5'- -aUCCGCUggaagUCCACgUCGU-CCGGCACGu -3'
miRNA:   3'- gaAGGUGA-----AGGUG-AGCGuGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 137413 0.75 0.547378
Target:  5'- -gUCCGCggacgCCGCggagacCGCGCCGGCGCu -3'
miRNA:   3'- gaAGGUGaa---GGUGa-----GCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 83634 0.75 0.547378
Target:  5'- -cUCCACgcCUAC-CGCugCGGCGCGg -3'
miRNA:   3'- gaAGGUGaaGGUGaGCGugGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 82426 0.75 0.557219
Target:  5'- uCUUCguCUUCCcucaGCUCGCGgcUCGGCACGg -3'
miRNA:   3'- -GAAGguGAAGG----UGAGCGU--GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 16147 0.73 0.617097
Target:  5'- --gCCGCUUCUuCUCGgaGCCGGCAUGa -3'
miRNA:   3'- gaaGGUGAAGGuGAGCg-UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 59287 0.73 0.637218
Target:  5'- -aUCCGCUcgCCGCUCGaCGCCGcGCAgCGc -3'
miRNA:   3'- gaAGGUGAa-GGUGAGC-GUGGC-CGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 19513 0.72 0.677349
Target:  5'- --gUCGCg-CCGCUCggaGCGCCGGCGCGg -3'
miRNA:   3'- gaaGGUGaaGGUGAG---CGUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 138352 0.72 0.677349
Target:  5'- uCUUCCGCgcgagcgaUCUGCUUGUACCGGUcgGCGa -3'
miRNA:   3'- -GAAGGUGa-------AGGUGAGCGUGGCCG--UGC- -5'
11036 3' -55.6 NC_002794.1 + 68940 0.71 0.745865
Target:  5'- --cCCGCgggCCGCg-GCGCCGGCGCc -3'
miRNA:   3'- gaaGGUGaa-GGUGagCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 52923 0.71 0.764705
Target:  5'- --gCCGCcgUCGCUCG-GCCGGCACGc -3'
miRNA:   3'- gaaGGUGaaGGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 18673 0.71 0.764705
Target:  5'- gCUUCCucgGCUgCCGC-CGCcgucuCCGGCACGg -3'
miRNA:   3'- -GAAGG---UGAaGGUGaGCGu----GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 181517 0.71 0.773039
Target:  5'- -gUCCACgucgUCCGUUCGCccgccgccggcggGCCGGCGCu -3'
miRNA:   3'- gaAGGUGa---AGGUGAGCG-------------UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 80474 0.71 0.773959
Target:  5'- --cCCGuCUUCCGCgUCGagcuggcgcacCACCGGCACGu -3'
miRNA:   3'- gaaGGU-GAAGGUG-AGC-----------GUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 69006 0.71 0.773959
Target:  5'- cCUUCCuCcUCCGCgugCGCgacGCCGGCGCc -3'
miRNA:   3'- -GAAGGuGaAGGUGa--GCG---UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 18632 0.7 0.78309
Target:  5'- -cUCCgACgcCCGCUC-CGCCGGCACc -3'
miRNA:   3'- gaAGG-UGaaGGUGAGcGUGGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.