miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 56807 0.7 0.800951
Target:  5'- cCUUCCugU-CCAC-CGCGCUGGCcCu -3'
miRNA:   3'- -GAAGGugAaGGUGaGCGUGGCCGuGc -5'
11036 3' -55.6 NC_002794.1 + 18871 0.7 0.800951
Target:  5'- --gCCAacgCCAC-CGaCGCCGGCGCGg -3'
miRNA:   3'- gaaGGUgaaGGUGaGC-GUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 120312 0.7 0.809664
Target:  5'- cCUUgCugUUCCGuCUCGaCACgGGCACc -3'
miRNA:   3'- -GAAgGugAAGGU-GAGC-GUGgCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 69045 0.7 0.818222
Target:  5'- gCUUCCucGC-UCCGCUCGCcacgggccgccGCCGGC-CGc -3'
miRNA:   3'- -GAAGG--UGaAGGUGAGCG-----------UGGCCGuGC- -5'
11036 3' -55.6 NC_002794.1 + 100578 0.7 0.818222
Target:  5'- --aCCuCUUCaCGCUCGgGCCGuGCGCGc -3'
miRNA:   3'- gaaGGuGAAG-GUGAGCgUGGC-CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 71393 0.69 0.834839
Target:  5'- -cUCCACggUCUgcgGCUCGgGCCGGC-CGu -3'
miRNA:   3'- gaAGGUGa-AGG---UGAGCgUGGCCGuGC- -5'
11036 3' -55.6 NC_002794.1 + 32297 0.69 0.834839
Target:  5'- --gCCGCcgCCGCggcggcCGCGCCGGcCGCGg -3'
miRNA:   3'- gaaGGUGaaGGUGa-----GCGUGGCC-GUGC- -5'
11036 3' -55.6 NC_002794.1 + 184352 0.69 0.842884
Target:  5'- -gUCCGCa---GCUCGCAgCGGCGCu -3'
miRNA:   3'- gaAGGUGaaggUGAGCGUgGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 80036 0.69 0.850744
Target:  5'- --aCCACUcgCCGacaGUGCCGGCGCGa -3'
miRNA:   3'- gaaGGUGAa-GGUgagCGUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 193514 0.69 0.858413
Target:  5'- -cUCCACcgCCGCgCGCACCuuccGCGCGu -3'
miRNA:   3'- gaAGGUGaaGGUGaGCGUGGc---CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 194014 0.68 0.873151
Target:  5'- -cUUCGCggCCGC-CGcCGCCGGCGCc -3'
miRNA:   3'- gaAGGUGaaGGUGaGC-GUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 19798 0.68 0.873151
Target:  5'- ---aCGCUgcUCCGCUCGgACCGcGCGCc -3'
miRNA:   3'- gaagGUGA--AGGUGAGCgUGGC-CGUGc -5'
11036 3' -55.6 NC_002794.1 + 168316 0.68 0.873151
Target:  5'- --aCCACgagUCCugUCaCGCCGGCGa- -3'
miRNA:   3'- gaaGGUGa--AGGugAGcGUGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 72660 0.68 0.873151
Target:  5'- -aUCCGCUUCCgACUCu--CCGGCAg- -3'
miRNA:   3'- gaAGGUGAAGG-UGAGcguGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 100314 0.68 0.873151
Target:  5'- --gCCGCUggCACgCGCgGCCGGCGCa -3'
miRNA:   3'- gaaGGUGAagGUGaGCG-UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 53750 0.68 0.880209
Target:  5'- --gCCGCUgccgCCGC-CGCuGCCGGCGgCGg -3'
miRNA:   3'- gaaGGUGAa---GGUGaGCG-UGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 123249 0.68 0.880209
Target:  5'- --gCCugUgCCACUUuCGCCGGCugGu -3'
miRNA:   3'- gaaGGugAaGGUGAGcGUGGCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 115602 0.68 0.880209
Target:  5'- -gUCgAC--CCGCUCGC-CCGGCGCc -3'
miRNA:   3'- gaAGgUGaaGGUGAGCGuGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 14725 0.68 0.887055
Target:  5'- --gCgGCUUCgGCUCGgGguCCGGCGCGu -3'
miRNA:   3'- gaaGgUGAAGgUGAGCgU--GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 42459 0.68 0.887055
Target:  5'- gUUCCAUggcgucgUCCAUgucgcgCGCGCCGGgGCc -3'
miRNA:   3'- gAAGGUGa------AGGUGa-----GCGUGGCCgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.