miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 188596 0.66 0.947472
Target:  5'- -cUCCACggCCGcCUUGCGCCGcagguGUGCGa -3'
miRNA:   3'- gaAGGUGaaGGU-GAGCGUGGC-----CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 46606 0.66 0.943126
Target:  5'- -gUCCGCcgCCGuC-CGCGCCgGGCugGa -3'
miRNA:   3'- gaAGGUGaaGGU-GaGCGUGG-CCGugC- -5'
11036 3' -55.6 NC_002794.1 + 127341 0.66 0.943126
Target:  5'- --gCCGCUgccgagaCGCUCGCGgcggCGGCGCGg -3'
miRNA:   3'- gaaGGUGAag-----GUGAGCGUg---GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 81798 0.66 0.943126
Target:  5'- uUUCCGCUgccucagCCGCgCGCACCG-CAUc -3'
miRNA:   3'- gAAGGUGAa------GGUGaGCGUGGCcGUGc -5'
11036 3' -55.6 NC_002794.1 + 92708 0.66 0.942229
Target:  5'- --cCCGCUgaccgugucgagCCugUCGCGCUGGCuGCu -3'
miRNA:   3'- gaaGGUGAa-----------GGugAGCGUGGCCG-UGc -5'
11036 3' -55.6 NC_002794.1 + 107761 0.66 0.938552
Target:  5'- --gCCGCUggcuggagCgCGCUCGC-CCGGCgACGa -3'
miRNA:   3'- gaaGGUGAa-------G-GUGAGCGuGGCCG-UGC- -5'
11036 3' -55.6 NC_002794.1 + 187452 0.66 0.938552
Target:  5'- -gUCUGCcgCCGCUCGgcguCGCuCGGCGCGc -3'
miRNA:   3'- gaAGGUGaaGGUGAGC----GUG-GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 46975 0.66 0.938552
Target:  5'- --gCCACcgugUUC-CUCGUcccccGCCGGCACGg -3'
miRNA:   3'- gaaGGUGa---AGGuGAGCG-----UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 148527 0.67 0.933748
Target:  5'- gCUgcgCCGCUUCCcgugcCUCGUcgGCUGcGCGCGg -3'
miRNA:   3'- -GAa--GGUGAAGGu----GAGCG--UGGC-CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 127587 0.67 0.928714
Target:  5'- --aCgGCUUUCACUCuGCGCggccgcugagCGGCGCGg -3'
miRNA:   3'- gaaGgUGAAGGUGAG-CGUG----------GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 107197 0.67 0.928714
Target:  5'- --gCCGCcgCCGgcCUCGC-CCGGCGCc -3'
miRNA:   3'- gaaGGUGaaGGU--GAGCGuGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 193298 0.67 0.928714
Target:  5'- --gUCGCcgUCCGCUcCGCGCC-GCACGc -3'
miRNA:   3'- gaaGGUGa-AGGUGA-GCGUGGcCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 62747 0.67 0.928714
Target:  5'- --cCCGCggCCGuCUCGCuCCGGCucCGg -3'
miRNA:   3'- gaaGGUGaaGGU-GAGCGuGGCCGu-GC- -5'
11036 3' -55.6 NC_002794.1 + 190190 0.67 0.923449
Target:  5'- --gCCACcUCCACgcgcuccaGCGCCGcGCGCa -3'
miRNA:   3'- gaaGGUGaAGGUGag------CGUGGC-CGUGc -5'
11036 3' -55.6 NC_002794.1 + 179819 0.67 0.923449
Target:  5'- uCUUCCGCg--CACUCGUcgGCCucggucagcguGGCGCGg -3'
miRNA:   3'- -GAAGGUGaagGUGAGCG--UGG-----------CCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 47949 0.67 0.923449
Target:  5'- --gCCGCgcgUCC-Cg-GCGCCGGCugGg -3'
miRNA:   3'- gaaGGUGa--AGGuGagCGUGGCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 99802 0.67 0.917953
Target:  5'- ---gCGCgcgCCGCggGCGCCGGCGCc -3'
miRNA:   3'- gaagGUGaa-GGUGagCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 100089 0.67 0.917953
Target:  5'- uCUUCCACgUCCGCgugcggcgcgUGCAgCGGUGCu -3'
miRNA:   3'- -GAAGGUGaAGGUGa---------GCGUgGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 127482 0.67 0.917953
Target:  5'- --aCCACcgCCGCUCuGCGCCGGgAa- -3'
miRNA:   3'- gaaGGUGaaGGUGAG-CGUGGCCgUgc -5'
11036 3' -55.6 NC_002794.1 + 134174 0.67 0.917953
Target:  5'- --gCCGCgcggauggCCAcCUCGUAUCGGCugGu -3'
miRNA:   3'- gaaGGUGaa------GGU-GAGCGUGGCCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.