miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 100089 0.67 0.917953
Target:  5'- uCUUCCACgUCCGCgugcggcgcgUGCAgCGGUGCu -3'
miRNA:   3'- -GAAGGUGaAGGUGa---------GCGUgGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 127482 0.67 0.917953
Target:  5'- --aCCACcgCCGCUCuGCGCCGGgAa- -3'
miRNA:   3'- gaaGGUGaaGGUGAG-CGUGGCCgUgc -5'
11036 3' -55.6 NC_002794.1 + 108203 0.67 0.917953
Target:  5'- ---gCGCUgcgCCGC-CGCGCCGGCcucGCGc -3'
miRNA:   3'- gaagGUGAa--GGUGaGCGUGGCCG---UGC- -5'
11036 3' -55.6 NC_002794.1 + 72074 0.67 0.912227
Target:  5'- --cCCGCgugCCcUUCGUacACCGGCACGc -3'
miRNA:   3'- gaaGGUGaa-GGuGAGCG--UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 19681 0.67 0.912227
Target:  5'- -cUCCGCUaCCGCcCGCAgacguCCGGCAa- -3'
miRNA:   3'- gaAGGUGAaGGUGaGCGU-----GGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 82946 0.67 0.912227
Target:  5'- -cUCCAggcCCGC-CGCGCaCGGCGCGc -3'
miRNA:   3'- gaAGGUgaaGGUGaGCGUG-GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 114658 0.67 0.912227
Target:  5'- -gUgCugUUCgCGCgCGCGCCGGUACu -3'
miRNA:   3'- gaAgGugAAG-GUGaGCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 108434 0.67 0.912227
Target:  5'- --cCCGCgaccggcggCACUCGCggcggcggcccGCCGGCACGg -3'
miRNA:   3'- gaaGGUGaag------GUGAGCG-----------UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 112310 0.67 0.906877
Target:  5'- -gUCCgACUUCgGCgccgacggcggggagCGCGCCGGCcgGCGg -3'
miRNA:   3'- gaAGG-UGAAGgUGa--------------GCGUGGCCG--UGC- -5'
11036 3' -55.6 NC_002794.1 + 108149 0.67 0.906272
Target:  5'- -aUUCGCcgCCGggaGCGCCGGCGCGa -3'
miRNA:   3'- gaAGGUGaaGGUgagCGUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 143394 0.67 0.906272
Target:  5'- -gUCaGCUgCUGCUCG-ACCGGCGCGg -3'
miRNA:   3'- gaAGgUGAaGGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 62975 0.67 0.906272
Target:  5'- --cCCGCUUCCugaUCacCGCCGGCGCc -3'
miRNA:   3'- gaaGGUGAAGGug-AGc-GUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 41760 0.68 0.900089
Target:  5'- --cCCGCUUCCACggagaucaGC-CCGGcCGCGu -3'
miRNA:   3'- gaaGGUGAAGGUGag------CGuGGCC-GUGC- -5'
11036 3' -55.6 NC_002794.1 + 81565 0.68 0.893683
Target:  5'- --gCCGCcgCCGC-CGCGCCGG-ACGa -3'
miRNA:   3'- gaaGGUGaaGGUGaGCGUGGCCgUGC- -5'
11036 3' -55.6 NC_002794.1 + 180290 0.68 0.893683
Target:  5'- --cCCGCgccgCCGCaacaCGCcgGCCGGCGCGa -3'
miRNA:   3'- gaaGGUGaa--GGUGa---GCG--UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 44288 0.68 0.893683
Target:  5'- -gUCCGCgcCCGC-CGgGCCGGCgagGCGg -3'
miRNA:   3'- gaAGGUGaaGGUGaGCgUGGCCG---UGC- -5'
11036 3' -55.6 NC_002794.1 + 42459 0.68 0.887055
Target:  5'- gUUCCAUggcgucgUCCAUgucgcgCGCGCCGGgGCc -3'
miRNA:   3'- gAAGGUGa------AGGUGa-----GCGUGGCCgUGc -5'
11036 3' -55.6 NC_002794.1 + 14725 0.68 0.887055
Target:  5'- --gCgGCUUCgGCUCGgGguCCGGCGCGu -3'
miRNA:   3'- gaaGgUGAAGgUGAGCgU--GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 123249 0.68 0.880209
Target:  5'- --gCCugUgCCACUUuCGCCGGCugGu -3'
miRNA:   3'- gaaGGugAaGGUGAGcGUGGCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 115602 0.68 0.880209
Target:  5'- -gUCgAC--CCGCUCGC-CCGGCGCc -3'
miRNA:   3'- gaAGgUGaaGGUGAGCGuGGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.