miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 12502 0.66 0.951593
Target:  5'- gUUCC-CgagCCGCUCG-ACCGGCGg- -3'
miRNA:   3'- gAAGGuGaa-GGUGAGCgUGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 14725 0.68 0.887055
Target:  5'- --gCgGCUUCgGCUCGgGguCCGGCGCGu -3'
miRNA:   3'- gaaGgUGAAGgUGAGCgU--GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 16147 0.73 0.617097
Target:  5'- --gCCGCUUCUuCUCGgaGCCGGCAUGa -3'
miRNA:   3'- gaaGGUGAAGGuGAGCg-UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 18632 0.7 0.78309
Target:  5'- -cUCCgACgcCCGCUC-CGCCGGCACc -3'
miRNA:   3'- gaAGG-UGaaGGUGAGcGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 18673 0.71 0.764705
Target:  5'- gCUUCCucgGCUgCCGC-CGCcgucuCCGGCACGg -3'
miRNA:   3'- -GAAGG---UGAaGGUGaGCGu----GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 18871 0.7 0.800951
Target:  5'- --gCCAacgCCAC-CGaCGCCGGCGCGg -3'
miRNA:   3'- gaaGGUgaaGGUGaGC-GUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 19513 0.72 0.677349
Target:  5'- --gUCGCg-CCGCUCggaGCGCCGGCGCGg -3'
miRNA:   3'- gaaGGUGaaGGUGAG---CGUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 19681 0.67 0.912227
Target:  5'- -cUCCGCUaCCGCcCGCAgacguCCGGCAa- -3'
miRNA:   3'- gaAGGUGAaGGUGaGCGU-----GGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 19798 0.68 0.873151
Target:  5'- ---aCGCUgcUCCGCUCGgACCGcGCGCc -3'
miRNA:   3'- gaagGUGA--AGGUGAGCgUGGC-CGUGc -5'
11036 3' -55.6 NC_002794.1 + 22579 0.75 0.537593
Target:  5'- --gCCGCUgUCCAagUCGCGCuCGGCACGg -3'
miRNA:   3'- gaaGGUGA-AGGUg-AGCGUG-GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 30064 0.66 0.947472
Target:  5'- --cCCGCggggUCCGgUCGC-CCGGUcgACGa -3'
miRNA:   3'- gaaGGUGa---AGGUgAGCGuGGCCG--UGC- -5'
11036 3' -55.6 NC_002794.1 + 32297 0.69 0.834839
Target:  5'- --gCCGCcgCCGCggcggcCGCGCCGGcCGCGg -3'
miRNA:   3'- gaaGGUGaaGGUGa-----GCGUGGCC-GUGC- -5'
11036 3' -55.6 NC_002794.1 + 34975 0.66 0.955492
Target:  5'- -gUCC-CUggCCACgaaacUGCGCCGGCuGCGg -3'
miRNA:   3'- gaAGGuGAa-GGUGa----GCGUGGCCG-UGC- -5'
11036 3' -55.6 NC_002794.1 + 37265 0.66 0.959172
Target:  5'- -cUCCG--UCgGCgggCGCGCgGGCGCGg -3'
miRNA:   3'- gaAGGUgaAGgUGa--GCGUGgCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 41760 0.68 0.900089
Target:  5'- --cCCGCUUCCACggagaucaGC-CCGGcCGCGu -3'
miRNA:   3'- gaaGGUGAAGGUGag------CGuGGCC-GUGC- -5'
11036 3' -55.6 NC_002794.1 + 42459 0.68 0.887055
Target:  5'- gUUCCAUggcgucgUCCAUgucgcgCGCGCCGGgGCc -3'
miRNA:   3'- gAAGGUGa------AGGUGa-----GCGUGGCCgUGc -5'
11036 3' -55.6 NC_002794.1 + 44288 0.68 0.893683
Target:  5'- -gUCCGCgcCCGC-CGgGCCGGCgagGCGg -3'
miRNA:   3'- gaAGGUGaaGGUGaGCgUGGCCG---UGC- -5'
11036 3' -55.6 NC_002794.1 + 46606 0.66 0.943126
Target:  5'- -gUCCGCcgCCGuC-CGCGCCgGGCugGa -3'
miRNA:   3'- gaAGGUGaaGGU-GaGCGUGG-CCGugC- -5'
11036 3' -55.6 NC_002794.1 + 46975 0.66 0.938552
Target:  5'- --gCCACcgugUUC-CUCGUcccccGCCGGCACGg -3'
miRNA:   3'- gaaGGUGa---AGGuGAGCG-----UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 47949 0.67 0.923449
Target:  5'- --gCCGCgcgUCC-Cg-GCGCCGGCugGg -3'
miRNA:   3'- gaaGGUGa--AGGuGagCGUGGCCGugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.