miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 49017 0.66 0.947472
Target:  5'- --gCCGCggcggCCGCggCGUcguCCGGCGCGg -3'
miRNA:   3'- gaaGGUGaa---GGUGa-GCGu--GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 52923 0.71 0.764705
Target:  5'- --gCCGCcgUCGCUCG-GCCGGCACGc -3'
miRNA:   3'- gaaGGUGaaGGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 53240 0.66 0.947472
Target:  5'- -gUCCuCggcCCGC-CGCGCCGGCGuCGc -3'
miRNA:   3'- gaAGGuGaa-GGUGaGCGUGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 53750 0.68 0.880209
Target:  5'- --gCCGCUgccgCCGC-CGCuGCCGGCGgCGg -3'
miRNA:   3'- gaaGGUGAa---GGUGaGCG-UGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 56807 0.7 0.800951
Target:  5'- cCUUCCugU-CCAC-CGCGCUGGCcCu -3'
miRNA:   3'- -GAAGGugAaGGUGaGCGUGGCCGuGc -5'
11036 3' -55.6 NC_002794.1 + 58581 0.67 0.917953
Target:  5'- --cCUACUUCCACcagCGCGgCgGGCugGc -3'
miRNA:   3'- gaaGGUGAAGGUGa--GCGU-GgCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 58692 0.66 0.955492
Target:  5'- --aCCGCcagCUGCUCGgGCUGGUGCGc -3'
miRNA:   3'- gaaGGUGaa-GGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 59287 0.73 0.637218
Target:  5'- -aUCCGCUcgCCGCUCGaCGCCGcGCAgCGc -3'
miRNA:   3'- gaAGGUGAa-GGUGAGC-GUGGC-CGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 59941 0.66 0.951593
Target:  5'- uCUUCCGCgucuuccCCAUgcaCGUcuACCGGCACc -3'
miRNA:   3'- -GAAGGUGaa-----GGUGa--GCG--UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 62325 0.66 0.959172
Target:  5'- --aCCGCcccUCGCUggcggagccCGCGCCGGCGCa -3'
miRNA:   3'- gaaGGUGaa-GGUGA---------GCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 62747 0.67 0.928714
Target:  5'- --cCCGCggCCGuCUCGCuCCGGCucCGg -3'
miRNA:   3'- gaaGGUGaaGGU-GAGCGuGGCCGu-GC- -5'
11036 3' -55.6 NC_002794.1 + 62975 0.67 0.906272
Target:  5'- --cCCGCUUCCugaUCacCGCCGGCGCc -3'
miRNA:   3'- gaaGGUGAAGGug-AGc-GUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 65046 0.66 0.959172
Target:  5'- -cUCCGCUaCCAcCUCGaccuUCGGCACc -3'
miRNA:   3'- gaAGGUGAaGGU-GAGCgu--GGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 68940 0.71 0.745865
Target:  5'- --cCCGCgggCCGCg-GCGCCGGCGCc -3'
miRNA:   3'- gaaGGUGaa-GGUGagCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 68972 0.66 0.959172
Target:  5'- -cUCCGCgggCCGCga-CGCCGGCGuCGa -3'
miRNA:   3'- gaAGGUGaa-GGUGagcGUGGCCGU-GC- -5'
11036 3' -55.6 NC_002794.1 + 69006 0.71 0.773959
Target:  5'- cCUUCCuCcUCCGCgugCGCgacGCCGGCGCc -3'
miRNA:   3'- -GAAGGuGaAGGUGa--GCG---UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 69045 0.7 0.818222
Target:  5'- gCUUCCucGC-UCCGCUCGCcacgggccgccGCCGGC-CGc -3'
miRNA:   3'- -GAAGG--UGaAGGUGAGCG-----------UGGCCGuGC- -5'
11036 3' -55.6 NC_002794.1 + 71393 0.69 0.834839
Target:  5'- -cUCCACggUCUgcgGCUCGgGCCGGC-CGu -3'
miRNA:   3'- gaAGGUGa-AGG---UGAGCgUGGCCGuGC- -5'
11036 3' -55.6 NC_002794.1 + 71930 0.66 0.955112
Target:  5'- --aCgACUUCCAggucgcgcagcucCUCGCcgacguACCGGCGCa -3'
miRNA:   3'- gaaGgUGAAGGU-------------GAGCG------UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 72074 0.67 0.912227
Target:  5'- --cCCGCgugCCcUUCGUacACCGGCACGc -3'
miRNA:   3'- gaaGGUGaa-GGuGAGCG--UGGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.