miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 3' -55.6 NC_002794.1 + 194014 0.68 0.873151
Target:  5'- -cUUCGCggCCGC-CGcCGCCGGCGCc -3'
miRNA:   3'- gaAGGUGaaGGUGaGC-GUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 193514 0.69 0.858413
Target:  5'- -cUCCACcgCCGCgCGCACCuuccGCGCGu -3'
miRNA:   3'- gaAGGUGaaGGUGaGCGUGGc---CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 193414 0.66 0.947895
Target:  5'- -cUCCGCcgCCGC-CGCccgucguccagccguCCGGCACGc -3'
miRNA:   3'- gaAGGUGaaGGUGaGCGu--------------GGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 193298 0.67 0.928714
Target:  5'- --gUCGCcgUCCGCUcCGCGCC-GCACGc -3'
miRNA:   3'- gaaGGUGa-AGGUGA-GCGUGGcCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 190261 0.76 0.499113
Target:  5'- -cUCCGCUUCCAgUCGCacgcGCCGGUAg- -3'
miRNA:   3'- gaAGGUGAAGGUgAGCG----UGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 190190 0.67 0.923449
Target:  5'- --gCCACcUCCACgcgcuccaGCGCCGcGCGCa -3'
miRNA:   3'- gaaGGUGaAGGUGag------CGUGGC-CGUGc -5'
11036 3' -55.6 NC_002794.1 + 188596 0.66 0.947472
Target:  5'- -cUCCACggCCGcCUUGCGCCGcagguGUGCGa -3'
miRNA:   3'- gaAGGUGaaGGU-GAGCGUGGC-----CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 187452 0.66 0.938552
Target:  5'- -gUCUGCcgCCGCUCGgcguCGCuCGGCGCGc -3'
miRNA:   3'- gaAGGUGaaGGUGAGC----GUG-GCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 184756 0.67 0.917953
Target:  5'- -gUCCAgCgUUCCACggucaGCGCCGGCuCGc -3'
miRNA:   3'- gaAGGU-G-AAGGUGag---CGUGGCCGuGC- -5'
11036 3' -55.6 NC_002794.1 + 184352 0.69 0.842884
Target:  5'- -gUCCGCa---GCUCGCAgCGGCGCu -3'
miRNA:   3'- gaAGGUGaaggUGAGCGUgGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 181517 0.71 0.773039
Target:  5'- -gUCCACgucgUCCGUUCGCccgccgccggcggGCCGGCGCu -3'
miRNA:   3'- gaAGGUGa---AGGUGAGCG-------------UGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 180290 0.68 0.893683
Target:  5'- --cCCGCgccgCCGCaacaCGCcgGCCGGCGCGa -3'
miRNA:   3'- gaaGGUGaa--GGUGa---GCG--UGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 179819 0.67 0.923449
Target:  5'- uCUUCCGCg--CACUCGUcgGCCucggucagcguGGCGCGg -3'
miRNA:   3'- -GAAGGUGaagGUGAGCG--UGG-----------CCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 168316 0.68 0.873151
Target:  5'- --aCCACgagUCCugUCaCGCCGGCGa- -3'
miRNA:   3'- gaaGGUGa--AGGugAGcGUGGCCGUgc -5'
11036 3' -55.6 NC_002794.1 + 148527 0.67 0.933748
Target:  5'- gCUgcgCCGCUUCCcgugcCUCGUcgGCUGcGCGCGg -3'
miRNA:   3'- -GAa--GGUGAAGGu----GAGCG--UGGC-CGUGC- -5'
11036 3' -55.6 NC_002794.1 + 143394 0.67 0.906272
Target:  5'- -gUCaGCUgCUGCUCG-ACCGGCGCGg -3'
miRNA:   3'- gaAGgUGAaGGUGAGCgUGGCCGUGC- -5'
11036 3' -55.6 NC_002794.1 + 138352 0.72 0.677349
Target:  5'- uCUUCCGCgcgagcgaUCUGCUUGUACCGGUcgGCGa -3'
miRNA:   3'- -GAAGGUGa-------AGGUGAGCGUGGCCG--UGC- -5'
11036 3' -55.6 NC_002794.1 + 137413 0.75 0.547378
Target:  5'- -gUCCGCggacgCCGCggagacCGCGCCGGCGCu -3'
miRNA:   3'- gaAGGUGaa---GGUGa-----GCGUGGCCGUGc -5'
11036 3' -55.6 NC_002794.1 + 134174 0.67 0.917953
Target:  5'- --gCCGCgcggauggCCAcCUCGUAUCGGCugGu -3'
miRNA:   3'- gaaGGUGaa------GGU-GAGCGUGGCCGugC- -5'
11036 3' -55.6 NC_002794.1 + 131246 0.66 0.947472
Target:  5'- --cCCGCcgCCGgaCGcCGCCGGCACc -3'
miRNA:   3'- gaaGGUGaaGGUgaGC-GUGGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.