miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 54553 0.66 0.991374
Target:  5'- gUCGUcCAGUAgaccuuuuuccgcuGCGAGCGGAUCaCCGu -3'
miRNA:   3'- gGGCAuGUCGU--------------UGCUCGUCUAGaGGU- -5'
11036 5' -52.7 NC_002794.1 + 91871 0.66 0.990543
Target:  5'- uCCCGggggugGCGGCGgcggccgcgACGAGCAGuUCacgCCGc -3'
miRNA:   3'- -GGGCa-----UGUCGU---------UGCUCGUCuAGa--GGU- -5'
11036 5' -52.7 NC_002794.1 + 117380 0.66 0.990543
Target:  5'- gCCUGcACGgucGCGGCGaAGCGGGcCUCCAc -3'
miRNA:   3'- -GGGCaUGU---CGUUGC-UCGUCUaGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 60072 0.66 0.989249
Target:  5'- aCCGUGCcGCcgccCGcGCAGGUgCUCCAc -3'
miRNA:   3'- gGGCAUGuCGuu--GCuCGUCUA-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 36687 0.66 0.989249
Target:  5'- gCCGaagACGGUccGCGuGCAGAcCUCCAg -3'
miRNA:   3'- gGGCa--UGUCGu-UGCuCGUCUaGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 121548 0.66 0.987821
Target:  5'- gCCCGgugACGacgaGACGAGCuucgGGAUCUUCAg -3'
miRNA:   3'- -GGGCa--UGUcg--UUGCUCG----UCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 339 0.66 0.987821
Target:  5'- gCCG-ACAGCccgcGCGAcgGCAGAUUUUCAc -3'
miRNA:   3'- gGGCaUGUCGu---UGCU--CGUCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 141811 0.66 0.987821
Target:  5'- cCUCGgACAGCcgguuggacgacGACGAGCGGAUCgCUc -3'
miRNA:   3'- -GGGCaUGUCG------------UUGCUCGUCUAGaGGu -5'
11036 5' -52.7 NC_002794.1 + 99925 0.66 0.987821
Target:  5'- gCCGUGCGGCGugGucuuGCGGcuguUCggCCGg -3'
miRNA:   3'- gGGCAUGUCGUugCu---CGUCu---AGa-GGU- -5'
11036 5' -52.7 NC_002794.1 + 39722 0.66 0.987821
Target:  5'- aCCGcUGCAGCAucacgACGAGgAGAUCa--- -3'
miRNA:   3'- gGGC-AUGUCGU-----UGCUCgUCUAGaggu -5'
11036 5' -52.7 NC_002794.1 + 65942 0.66 0.987821
Target:  5'- gUCGgcgGCGGUAucgucGCGAGCGGcggcGUCUCCu -3'
miRNA:   3'- gGGCa--UGUCGU-----UGCUCGUC----UAGAGGu -5'
11036 5' -52.7 NC_002794.1 + 107343 0.66 0.98625
Target:  5'- gUCCGUGggucCGGUcgccGCGAGC-GAUCUCCu -3'
miRNA:   3'- -GGGCAU----GUCGu---UGCUCGuCUAGAGGu -5'
11036 5' -52.7 NC_002794.1 + 87347 0.66 0.984528
Target:  5'- cCCCagcagcggGUcCGGCGGCGAGCGGcgUUCUg -3'
miRNA:   3'- -GGG--------CAuGUCGUUGCUCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 47760 0.66 0.984528
Target:  5'- gCCGUggucGCGGCAcaACGcGCAGGUCgagcggCCGc -3'
miRNA:   3'- gGGCA----UGUCGU--UGCuCGUCUAGa-----GGU- -5'
11036 5' -52.7 NC_002794.1 + 194917 0.66 0.984528
Target:  5'- gCCG-ACAGCAGCGGccGCAccagCUCCGa -3'
miRNA:   3'- gGGCaUGUCGUUGCU--CGUcua-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 179874 0.66 0.984528
Target:  5'- gUCUGUcCGGCGACGGGUaauAGcacacGUCUCCGg -3'
miRNA:   3'- -GGGCAuGUCGUUGCUCG---UC-----UAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 67879 0.67 0.982647
Target:  5'- uCCCGa--AGCucCGAGCGGA-CUCCc -3'
miRNA:   3'- -GGGCaugUCGuuGCUCGUCUaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 118330 0.67 0.982647
Target:  5'- -aCGgGCGGCGAgaaGAGCAGGUCgccCCAc -3'
miRNA:   3'- ggGCaUGUCGUUg--CUCGUCUAGa--GGU- -5'
11036 5' -52.7 NC_002794.1 + 135915 0.67 0.98245
Target:  5'- gCCGUACGGguuGCGGGCcAGGUaacgagcCUCCAu -3'
miRNA:   3'- gGGCAUGUCgu-UGCUCG-UCUA-------GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 182527 0.67 0.982051
Target:  5'- aCCGUccaccagcGCGGCAGCGAcugcgccgcgGCcggcaccgucaccgGGAUCUCCGu -3'
miRNA:   3'- gGGCA--------UGUCGUUGCU----------CG--------------UCUAGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.