miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 46647 0.76 0.654261
Target:  5'- gCCCGUGCAGCGAgGAaCAGcgCUCgCAg -3'
miRNA:   3'- -GGGCAUGUCGUUgCUcGUCuaGAG-GU- -5'
11036 5' -52.7 NC_002794.1 + 186863 0.74 0.734921
Target:  5'- gCCGUGCAGCAGC-AGCGGG-CUCg- -3'
miRNA:   3'- gGGCAUGUCGUUGcUCGUCUaGAGgu -5'
11036 5' -52.7 NC_002794.1 + 69313 0.74 0.76394
Target:  5'- aCUCGUACcGCucCGAGaGGAUCUCCAg -3'
miRNA:   3'- -GGGCAUGuCGuuGCUCgUCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 39575 0.73 0.782712
Target:  5'- cCCCGUGCucaAGU-ACGAGCGGGUCgcggCCu -3'
miRNA:   3'- -GGGCAUG---UCGuUGCUCGUCUAGa---GGu -5'
11036 5' -52.7 NC_002794.1 + 45292 0.73 0.808947
Target:  5'- aCUGUACgaGGCGACGuGCAGAUCguugcgcgcaaagUCCAg -3'
miRNA:   3'- gGGCAUG--UCGUUGCuCGUCUAG-------------AGGU- -5'
11036 5' -52.7 NC_002794.1 + 100017 0.72 0.835488
Target:  5'- gCCGcUACGGCGACGcGCAGAgUCUgCAc -3'
miRNA:   3'- gGGC-AUGUCGUUGCuCGUCU-AGAgGU- -5'
11036 5' -52.7 NC_002794.1 + 117547 0.72 0.843679
Target:  5'- gCCGUGCAGCAGCucGAGCcGGUCgugcagCCc -3'
miRNA:   3'- gGGCAUGUCGUUG--CUCGuCUAGa-----GGu -5'
11036 5' -52.7 NC_002794.1 + 66259 0.71 0.874444
Target:  5'- aCCCGUcCGGCcccguaGACGAGCGGAggggUCCGa -3'
miRNA:   3'- -GGGCAuGUCG------UUGCUCGUCUag--AGGU- -5'
11036 5' -52.7 NC_002794.1 + 50764 0.71 0.895252
Target:  5'- cCCCGggcgGCGGCGACG-GCGcGUCUCgGg -3'
miRNA:   3'- -GGGCa---UGUCGUUGCuCGUcUAGAGgU- -5'
11036 5' -52.7 NC_002794.1 + 72744 0.7 0.901731
Target:  5'- uCCCGcgGCGGCcgccgacCGAGCGGAUCUUa- -3'
miRNA:   3'- -GGGCa-UGUCGuu-----GCUCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 554 0.7 0.913983
Target:  5'- gCCCGgccuCGGCGcgGCGguGGCAGGUCUCg- -3'
miRNA:   3'- -GGGCau--GUCGU--UGC--UCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 100098 0.7 0.913983
Target:  5'- uCCgCGUGCGGC-GCGuGCAGcggugCUCCAu -3'
miRNA:   3'- -GG-GCAUGUCGuUGCuCGUCua---GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 117335 0.69 0.935618
Target:  5'- aUCCGccGCAGCGAgcUGAGCAcGAUCUCg- -3'
miRNA:   3'- -GGGCa-UGUCGUU--GCUCGU-CUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 186513 0.69 0.935618
Target:  5'- gCCGUGgaAGCAGCGcGGCAccuUCUCCAg -3'
miRNA:   3'- gGGCAUg-UCGUUGC-UCGUcu-AGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 28463 0.69 0.944996
Target:  5'- aCCCGUAgauagcuauccUAGCGACucGUAGAUCaUCCGu -3'
miRNA:   3'- -GGGCAU-----------GUCGUUGcuCGUCUAG-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 21467 0.69 0.944996
Target:  5'- gCCGUgACGGCAACGguGGCAGcggCUUCGg -3'
miRNA:   3'- gGGCA-UGUCGUUGC--UCGUCua-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 111322 0.69 0.944996
Target:  5'- gCCGggcCAGCGGCGcgggccGCAGAUCUgCCGg -3'
miRNA:   3'- gGGCau-GUCGUUGCu-----CGUCUAGA-GGU- -5'
11036 5' -52.7 NC_002794.1 + 41266 0.69 0.950999
Target:  5'- gCCCGUcgucgcgcuccgagaACGGCGgcggcuccgacGCGGGCcgcgugGGGUCUCCGa -3'
miRNA:   3'- -GGGCA---------------UGUCGU-----------UGCUCG------UCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 31138 0.69 0.953432
Target:  5'- gCCCGgACAGCAACGAauaggcGUAGAUggCCu -3'
miRNA:   3'- -GGGCaUGUCGUUGCU------CGUCUAgaGGu -5'
11036 5' -52.7 NC_002794.1 + 14989 0.69 0.953432
Target:  5'- aCCCGgcaGCAGCuccuCGGGCGG-UCUCg- -3'
miRNA:   3'- -GGGCa--UGUCGuu--GCUCGUCuAGAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.