miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 185421 0.67 0.980599
Target:  5'- gCCGUcgacucgacGCGGCGccaugcGCGGaCAGGUCUCCGc -3'
miRNA:   3'- gGGCA---------UGUCGU------UGCUcGUCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 190702 0.67 0.980599
Target:  5'- uCCCGgcGCAGCGuCGGGU---UCUCCAg -3'
miRNA:   3'- -GGGCa-UGUCGUuGCUCGucuAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 105464 0.67 0.980599
Target:  5'- gCCCGUucugGGaCGACGAGCcgucGUCUCCGg -3'
miRNA:   3'- -GGGCAug--UC-GUUGCUCGuc--UAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 103918 0.67 0.980599
Target:  5'- gCCGcGCAacGCGGCGAGCAGcgCgcguggCCGc -3'
miRNA:   3'- gGGCaUGU--CGUUGCUCGUCuaGa-----GGU- -5'
11036 5' -52.7 NC_002794.1 + 192618 0.67 0.980599
Target:  5'- gCCagGUGCGGaCAGuCGGGCGGccgCUCCAg -3'
miRNA:   3'- -GGg-CAUGUC-GUU-GCUCGUCua-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 104088 0.67 0.978376
Target:  5'- gCCCGUGCAGau-CGAGCAG--CUgCGu -3'
miRNA:   3'- -GGGCAUGUCguuGCUCGUCuaGAgGU- -5'
11036 5' -52.7 NC_002794.1 + 40418 0.67 0.978376
Target:  5'- gUCGgcCGGCGACucuGCAGAUCUCg- -3'
miRNA:   3'- gGGCauGUCGUUGcu-CGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 100538 0.67 0.978376
Target:  5'- aCCGaGgAGCAGCGGGCGGccUUCCc -3'
miRNA:   3'- gGGCaUgUCGUUGCUCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 46309 0.67 0.975718
Target:  5'- uUCCGagcGCGGCGGCGAcggcgccgucgccGCGGAcggCUCCAu -3'
miRNA:   3'- -GGGCa--UGUCGUUGCU-------------CGUCUa--GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 37431 0.67 0.973373
Target:  5'- gCCGUccGCAGCAGC-AGCAcgcacuGGUCUUCGg -3'
miRNA:   3'- gGGCA--UGUCGUUGcUCGU------CUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 181160 0.67 0.973373
Target:  5'- gCCCGUccgccgcgccgACGGCgAACG-GCGGAcaCUCCAa -3'
miRNA:   3'- -GGGCA-----------UGUCG-UUGCuCGUCUa-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 142628 0.67 0.972556
Target:  5'- --aGUACAGC-GCGAGCcgcaggggcucgucGGGUUUCCAg -3'
miRNA:   3'- gggCAUGUCGuUGCUCG--------------UCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 191476 0.68 0.970579
Target:  5'- aCCCagcgGCAGCcACGGGC-GAUCgUCCGc -3'
miRNA:   3'- -GGGca--UGUCGuUGCUCGuCUAG-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 145317 0.68 0.967581
Target:  5'- aCCG-GCGcGCGGCGGGCGGcgCUCgGg -3'
miRNA:   3'- gGGCaUGU-CGUUGCUCGUCuaGAGgU- -5'
11036 5' -52.7 NC_002794.1 + 117752 0.68 0.967581
Target:  5'- gUCCGcGCGuGguGCGcAGCAGGUCgUCCAg -3'
miRNA:   3'- -GGGCaUGU-CguUGC-UCGUCUAG-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 111584 0.68 0.967581
Target:  5'- aCgGUGgcCAGCucgAGCGGGguGAUCUCCc -3'
miRNA:   3'- gGgCAU--GUCG---UUGCUCguCUAGAGGu -5'
11036 5' -52.7 NC_002794.1 + 78325 0.68 0.967581
Target:  5'- uCCCG-GC-GCGACGGGCGGAggcgCCGg -3'
miRNA:   3'- -GGGCaUGuCGUUGCUCGUCUaga-GGU- -5'
11036 5' -52.7 NC_002794.1 + 70868 0.68 0.964373
Target:  5'- cUCCGgcgGCGGCAGCG-GCGG--CUCCu -3'
miRNA:   3'- -GGGCa--UGUCGUUGCuCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 188918 0.68 0.964373
Target:  5'- gCCCGUACAGCuuC-AGCGGAcaggcccgcUgUCCGg -3'
miRNA:   3'- -GGGCAUGUCGuuGcUCGUCU---------AgAGGU- -5'
11036 5' -52.7 NC_002794.1 + 51051 0.68 0.964373
Target:  5'- uCCCGUccgagACGGCGGCGAcgGC-GAcCUCCGa -3'
miRNA:   3'- -GGGCA-----UGUCGUUGCU--CGuCUaGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.