miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 104907 0.68 0.96404
Target:  5'- gCCGUGCuGCu-CGAGCAGGcgccgcgUCUCUu -3'
miRNA:   3'- gGGCAUGuCGuuGCUCGUCU-------AGAGGu -5'
11036 5' -52.7 NC_002794.1 + 141195 0.68 0.960948
Target:  5'- uCCC-UACGGCGAcucuucCGAGCAGccgCUCCu -3'
miRNA:   3'- -GGGcAUGUCGUU------GCUCGUCua-GAGGu -5'
11036 5' -52.7 NC_002794.1 + 94218 0.68 0.960948
Target:  5'- -aCGgugGCGGCGACGGGCGGG-CgggCCGg -3'
miRNA:   3'- ggGCa--UGUCGUUGCUCGUCUaGa--GGU- -5'
11036 5' -52.7 NC_002794.1 + 65771 0.68 0.957303
Target:  5'- gCCCGUGguGgGGcCGAGCGGAUCa--- -3'
miRNA:   3'- -GGGCAUguCgUU-GCUCGUCUAGaggu -5'
11036 5' -52.7 NC_002794.1 + 33113 0.68 0.957303
Target:  5'- -aCGUgaGCGGCcGCGGGCAGAcgaUCCAc -3'
miRNA:   3'- ggGCA--UGUCGuUGCUCGUCUag-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 108383 0.68 0.957303
Target:  5'- gCCGg--AGCGGgGAGCGGAggCUCCGg -3'
miRNA:   3'- gGGCaugUCGUUgCUCGUCUa-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 70032 0.68 0.957303
Target:  5'- gCCCGUucaGCAGCAGCacGUAGGUCgcCCGg -3'
miRNA:   3'- -GGGCA---UGUCGUUGcuCGUCUAGa-GGU- -5'
11036 5' -52.7 NC_002794.1 + 31138 0.69 0.953432
Target:  5'- gCCCGgACAGCAACGAauaggcGUAGAUggCCu -3'
miRNA:   3'- -GGGCaUGUCGUUGCU------CGUCUAgaGGu -5'
11036 5' -52.7 NC_002794.1 + 14989 0.69 0.953432
Target:  5'- aCCCGgcaGCAGCuccuCGGGCGG-UCUCg- -3'
miRNA:   3'- -GGGCa--UGUCGuu--GCUCGUCuAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 41266 0.69 0.950999
Target:  5'- gCCCGUcgucgcgcuccgagaACGGCGgcggcuccgacGCGGGCcgcgugGGGUCUCCGa -3'
miRNA:   3'- -GGGCA---------------UGUCGU-----------UGCUCG------UCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 28463 0.69 0.944996
Target:  5'- aCCCGUAgauagcuauccUAGCGACucGUAGAUCaUCCGu -3'
miRNA:   3'- -GGGCAU-----------GUCGUUGcuCGUCUAG-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 111322 0.69 0.944996
Target:  5'- gCCGggcCAGCGGCGcgggccGCAGAUCUgCCGg -3'
miRNA:   3'- gGGCau-GUCGUUGCu-----CGUCUAGA-GGU- -5'
11036 5' -52.7 NC_002794.1 + 21467 0.69 0.944996
Target:  5'- gCCGUgACGGCAACGguGGCAGcggCUUCGg -3'
miRNA:   3'- gGGCA-UGUCGUUGC--UCGUCua-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 117335 0.69 0.935618
Target:  5'- aUCCGccGCAGCGAgcUGAGCAcGAUCUCg- -3'
miRNA:   3'- -GGGCa-UGUCGUU--GCUCGU-CUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 186513 0.69 0.935618
Target:  5'- gCCGUGgaAGCAGCGcGGCAccuUCUCCAg -3'
miRNA:   3'- gGGCAUg-UCGUUGC-UCGUcu-AGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 554 0.7 0.913983
Target:  5'- gCCCGgccuCGGCGcgGCGguGGCAGGUCUCg- -3'
miRNA:   3'- -GGGCau--GUCGU--UGC--UCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 100098 0.7 0.913983
Target:  5'- uCCgCGUGCGGC-GCGuGCAGcggugCUCCAu -3'
miRNA:   3'- -GG-GCAUGUCGuUGCuCGUCua---GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 72744 0.7 0.901731
Target:  5'- uCCCGcgGCGGCcgccgacCGAGCGGAUCUUa- -3'
miRNA:   3'- -GGGCa-UGUCGuu-----GCUCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 50764 0.71 0.895252
Target:  5'- cCCCGggcgGCGGCGACG-GCGcGUCUCgGg -3'
miRNA:   3'- -GGGCa---UGUCGUUGCuCGUcUAGAGgU- -5'
11036 5' -52.7 NC_002794.1 + 66259 0.71 0.874444
Target:  5'- aCCCGUcCGGCcccguaGACGAGCGGAggggUCCGa -3'
miRNA:   3'- -GGGCAuGUCG------UUGCUCGUCUag--AGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.