miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 339 0.66 0.987821
Target:  5'- gCCG-ACAGCccgcGCGAcgGCAGAUUUUCAc -3'
miRNA:   3'- gGGCaUGUCGu---UGCU--CGUCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 554 0.7 0.913983
Target:  5'- gCCCGgccuCGGCGcgGCGguGGCAGGUCUCg- -3'
miRNA:   3'- -GGGCau--GUCGU--UGC--UCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 14989 0.69 0.953432
Target:  5'- aCCCGgcaGCAGCuccuCGGGCGG-UCUCg- -3'
miRNA:   3'- -GGGCa--UGUCGuu--GCUCGUCuAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 21467 0.69 0.944996
Target:  5'- gCCGUgACGGCAACGguGGCAGcggCUUCGg -3'
miRNA:   3'- gGGCA-UGUCGUUGC--UCGUCua-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 28463 0.69 0.944996
Target:  5'- aCCCGUAgauagcuauccUAGCGACucGUAGAUCaUCCGu -3'
miRNA:   3'- -GGGCAU-----------GUCGUUGcuCGUCUAG-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 31138 0.69 0.953432
Target:  5'- gCCCGgACAGCAACGAauaggcGUAGAUggCCu -3'
miRNA:   3'- -GGGCaUGUCGUUGCU------CGUCUAgaGGu -5'
11036 5' -52.7 NC_002794.1 + 33113 0.68 0.957303
Target:  5'- -aCGUgaGCGGCcGCGGGCAGAcgaUCCAc -3'
miRNA:   3'- ggGCA--UGUCGuUGCUCGUCUag-AGGU- -5'
11036 5' -52.7 NC_002794.1 + 36687 0.66 0.989249
Target:  5'- gCCGaagACGGUccGCGuGCAGAcCUCCAg -3'
miRNA:   3'- gGGCa--UGUCGu-UGCuCGUCUaGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 37431 0.67 0.973373
Target:  5'- gCCGUccGCAGCAGC-AGCAcgcacuGGUCUUCGg -3'
miRNA:   3'- gGGCA--UGUCGUUGcUCGU------CUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 39575 0.73 0.782712
Target:  5'- cCCCGUGCucaAGU-ACGAGCGGGUCgcggCCu -3'
miRNA:   3'- -GGGCAUG---UCGuUGCUCGUCUAGa---GGu -5'
11036 5' -52.7 NC_002794.1 + 39722 0.66 0.987821
Target:  5'- aCCGcUGCAGCAucacgACGAGgAGAUCa--- -3'
miRNA:   3'- gGGC-AUGUCGU-----UGCUCgUCUAGaggu -5'
11036 5' -52.7 NC_002794.1 + 40418 0.67 0.978376
Target:  5'- gUCGgcCGGCGACucuGCAGAUCUCg- -3'
miRNA:   3'- gGGCauGUCGUUGcu-CGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 41266 0.69 0.950999
Target:  5'- gCCCGUcgucgcgcuccgagaACGGCGgcggcuccgacGCGGGCcgcgugGGGUCUCCGa -3'
miRNA:   3'- -GGGCA---------------UGUCGU-----------UGCUCG------UCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 45292 0.73 0.808947
Target:  5'- aCUGUACgaGGCGACGuGCAGAUCguugcgcgcaaagUCCAg -3'
miRNA:   3'- gGGCAUG--UCGUUGCuCGUCUAG-------------AGGU- -5'
11036 5' -52.7 NC_002794.1 + 46309 0.67 0.975718
Target:  5'- uUCCGagcGCGGCGGCGAcggcgccgucgccGCGGAcggCUCCAu -3'
miRNA:   3'- -GGGCa--UGUCGUUGCU-------------CGUCUa--GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 46647 0.76 0.654261
Target:  5'- gCCCGUGCAGCGAgGAaCAGcgCUCgCAg -3'
miRNA:   3'- -GGGCAUGUCGUUgCUcGUCuaGAG-GU- -5'
11036 5' -52.7 NC_002794.1 + 47760 0.66 0.984528
Target:  5'- gCCGUggucGCGGCAcaACGcGCAGGUCgagcggCCGc -3'
miRNA:   3'- gGGCA----UGUCGU--UGCuCGUCUAGa-----GGU- -5'
11036 5' -52.7 NC_002794.1 + 50764 0.71 0.895252
Target:  5'- cCCCGggcgGCGGCGACG-GCGcGUCUCgGg -3'
miRNA:   3'- -GGGCa---UGUCGUUGCuCGUcUAGAGgU- -5'
11036 5' -52.7 NC_002794.1 + 51051 0.68 0.964373
Target:  5'- uCCCGUccgagACGGCGGCGAcgGC-GAcCUCCGa -3'
miRNA:   3'- -GGGCA-----UGUCGUUGCU--CGuCUaGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 54553 0.66 0.991374
Target:  5'- gUCGUcCAGUAgaccuuuuuccgcuGCGAGCGGAUCaCCGu -3'
miRNA:   3'- gGGCAuGUCGU--------------UGCUCGUCUAGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.