miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11036 5' -52.7 NC_002794.1 + 60072 0.66 0.989249
Target:  5'- aCCGUGCcGCcgccCGcGCAGGUgCUCCAc -3'
miRNA:   3'- gGGCAUGuCGuu--GCuCGUCUA-GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 65771 0.68 0.957303
Target:  5'- gCCCGUGguGgGGcCGAGCGGAUCa--- -3'
miRNA:   3'- -GGGCAUguCgUU-GCUCGUCUAGaggu -5'
11036 5' -52.7 NC_002794.1 + 65942 0.66 0.987821
Target:  5'- gUCGgcgGCGGUAucgucGCGAGCGGcggcGUCUCCu -3'
miRNA:   3'- gGGCa--UGUCGU-----UGCUCGUC----UAGAGGu -5'
11036 5' -52.7 NC_002794.1 + 66259 0.71 0.874444
Target:  5'- aCCCGUcCGGCcccguaGACGAGCGGAggggUCCGa -3'
miRNA:   3'- -GGGCAuGUCG------UUGCUCGUCUag--AGGU- -5'
11036 5' -52.7 NC_002794.1 + 67879 0.67 0.982647
Target:  5'- uCCCGa--AGCucCGAGCGGA-CUCCc -3'
miRNA:   3'- -GGGCaugUCGuuGCUCGUCUaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 69313 0.74 0.76394
Target:  5'- aCUCGUACcGCucCGAGaGGAUCUCCAg -3'
miRNA:   3'- -GGGCAUGuCGuuGCUCgUCUAGAGGU- -5'
11036 5' -52.7 NC_002794.1 + 70032 0.68 0.957303
Target:  5'- gCCCGUucaGCAGCAGCacGUAGGUCgcCCGg -3'
miRNA:   3'- -GGGCA---UGUCGUUGcuCGUCUAGa-GGU- -5'
11036 5' -52.7 NC_002794.1 + 70868 0.68 0.964373
Target:  5'- cUCCGgcgGCGGCAGCG-GCGG--CUCCu -3'
miRNA:   3'- -GGGCa--UGUCGUUGCuCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 72744 0.7 0.901731
Target:  5'- uCCCGcgGCGGCcgccgacCGAGCGGAUCUUa- -3'
miRNA:   3'- -GGGCa-UGUCGuu-----GCUCGUCUAGAGgu -5'
11036 5' -52.7 NC_002794.1 + 78325 0.68 0.967581
Target:  5'- uCCCG-GC-GCGACGGGCGGAggcgCCGg -3'
miRNA:   3'- -GGGCaUGuCGUUGCUCGUCUaga-GGU- -5'
11036 5' -52.7 NC_002794.1 + 87347 0.66 0.984528
Target:  5'- cCCCagcagcggGUcCGGCGGCGAGCGGcgUUCUg -3'
miRNA:   3'- -GGG--------CAuGUCGUUGCUCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 91871 0.66 0.990543
Target:  5'- uCCCGggggugGCGGCGgcggccgcgACGAGCAGuUCacgCCGc -3'
miRNA:   3'- -GGGCa-----UGUCGU---------UGCUCGUCuAGa--GGU- -5'
11036 5' -52.7 NC_002794.1 + 94218 0.68 0.960948
Target:  5'- -aCGgugGCGGCGACGGGCGGG-CgggCCGg -3'
miRNA:   3'- ggGCa--UGUCGUUGCUCGUCUaGa--GGU- -5'
11036 5' -52.7 NC_002794.1 + 99925 0.66 0.987821
Target:  5'- gCCGUGCGGCGugGucuuGCGGcuguUCggCCGg -3'
miRNA:   3'- gGGCAUGUCGUugCu---CGUCu---AGa-GGU- -5'
11036 5' -52.7 NC_002794.1 + 100017 0.72 0.835488
Target:  5'- gCCGcUACGGCGACGcGCAGAgUCUgCAc -3'
miRNA:   3'- gGGC-AUGUCGUUGCuCGUCU-AGAgGU- -5'
11036 5' -52.7 NC_002794.1 + 100098 0.7 0.913983
Target:  5'- uCCgCGUGCGGC-GCGuGCAGcggugCUCCAu -3'
miRNA:   3'- -GG-GCAUGUCGuUGCuCGUCua---GAGGU- -5'
11036 5' -52.7 NC_002794.1 + 100538 0.67 0.978376
Target:  5'- aCCGaGgAGCAGCGGGCGGccUUCCc -3'
miRNA:   3'- gGGCaUgUCGUUGCUCGUCuaGAGGu -5'
11036 5' -52.7 NC_002794.1 + 103918 0.67 0.980599
Target:  5'- gCCGcGCAacGCGGCGAGCAGcgCgcguggCCGc -3'
miRNA:   3'- gGGCaUGU--CGUUGCUCGUCuaGa-----GGU- -5'
11036 5' -52.7 NC_002794.1 + 104088 0.67 0.978376
Target:  5'- gCCCGUGCAGau-CGAGCAG--CUgCGu -3'
miRNA:   3'- -GGGCAUGUCguuGCUCGUCuaGAgGU- -5'
11036 5' -52.7 NC_002794.1 + 104907 0.68 0.96404
Target:  5'- gCCGUGCuGCu-CGAGCAGGcgccgcgUCUCUu -3'
miRNA:   3'- gGGCAUGuCGuuGCUCGUCU-------AGAGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.