Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11036 | 5' | -52.7 | NC_002794.1 | + | 194917 | 0.66 | 0.984528 |
Target: 5'- gCCG-ACAGCAGCGGccGCAccagCUCCGa -3' miRNA: 3'- gGGCaUGUCGUUGCU--CGUcua-GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 192618 | 0.67 | 0.980599 |
Target: 5'- gCCagGUGCGGaCAGuCGGGCGGccgCUCCAg -3' miRNA: 3'- -GGg-CAUGUC-GUU-GCUCGUCua-GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 191476 | 0.68 | 0.970579 |
Target: 5'- aCCCagcgGCAGCcACGGGC-GAUCgUCCGc -3' miRNA: 3'- -GGGca--UGUCGuUGCUCGuCUAG-AGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 190702 | 0.67 | 0.980599 |
Target: 5'- uCCCGgcGCAGCGuCGGGU---UCUCCAg -3' miRNA: 3'- -GGGCa-UGUCGUuGCUCGucuAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 188918 | 0.68 | 0.964373 |
Target: 5'- gCCCGUACAGCuuC-AGCGGAcaggcccgcUgUCCGg -3' miRNA: 3'- -GGGCAUGUCGuuGcUCGUCU---------AgAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 186863 | 0.74 | 0.734921 |
Target: 5'- gCCGUGCAGCAGC-AGCGGG-CUCg- -3' miRNA: 3'- gGGCAUGUCGUUGcUCGUCUaGAGgu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 186513 | 0.69 | 0.935618 |
Target: 5'- gCCGUGgaAGCAGCGcGGCAccuUCUCCAg -3' miRNA: 3'- gGGCAUg-UCGUUGC-UCGUcu-AGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 185421 | 0.67 | 0.980599 |
Target: 5'- gCCGUcgacucgacGCGGCGccaugcGCGGaCAGGUCUCCGc -3' miRNA: 3'- gGGCA---------UGUCGU------UGCUcGUCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 182527 | 0.67 | 0.982051 |
Target: 5'- aCCGUccaccagcGCGGCAGCGAcugcgccgcgGCcggcaccgucaccgGGAUCUCCGu -3' miRNA: 3'- gGGCA--------UGUCGUUGCU----------CG--------------UCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 181160 | 0.67 | 0.973373 |
Target: 5'- gCCCGUccgccgcgccgACGGCgAACG-GCGGAcaCUCCAa -3' miRNA: 3'- -GGGCA-----------UGUCG-UUGCuCGUCUa-GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 179874 | 0.66 | 0.984528 |
Target: 5'- gUCUGUcCGGCGACGGGUaauAGcacacGUCUCCGg -3' miRNA: 3'- -GGGCAuGUCGUUGCUCG---UC-----UAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 145317 | 0.68 | 0.967581 |
Target: 5'- aCCG-GCGcGCGGCGGGCGGcgCUCgGg -3' miRNA: 3'- gGGCaUGU-CGUUGCUCGUCuaGAGgU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 142628 | 0.67 | 0.972556 |
Target: 5'- --aGUACAGC-GCGAGCcgcaggggcucgucGGGUUUCCAg -3' miRNA: 3'- gggCAUGUCGuUGCUCG--------------UCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 141811 | 0.66 | 0.987821 |
Target: 5'- cCUCGgACAGCcgguuggacgacGACGAGCGGAUCgCUc -3' miRNA: 3'- -GGGCaUGUCG------------UUGCUCGUCUAGaGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 141195 | 0.68 | 0.960948 |
Target: 5'- uCCC-UACGGCGAcucuucCGAGCAGccgCUCCu -3' miRNA: 3'- -GGGcAUGUCGUU------GCUCGUCua-GAGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 135915 | 0.67 | 0.98245 |
Target: 5'- gCCGUACGGguuGCGGGCcAGGUaacgagcCUCCAu -3' miRNA: 3'- gGGCAUGUCgu-UGCUCG-UCUA-------GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 121548 | 0.66 | 0.987821 |
Target: 5'- gCCCGgugACGacgaGACGAGCuucgGGAUCUUCAg -3' miRNA: 3'- -GGGCa--UGUcg--UUGCUCG----UCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 118330 | 0.67 | 0.982647 |
Target: 5'- -aCGgGCGGCGAgaaGAGCAGGUCgccCCAc -3' miRNA: 3'- ggGCaUGUCGUUg--CUCGUCUAGa--GGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 117752 | 0.68 | 0.967581 |
Target: 5'- gUCCGcGCGuGguGCGcAGCAGGUCgUCCAg -3' miRNA: 3'- -GGGCaUGU-CguUGC-UCGUCUAG-AGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 117547 | 0.72 | 0.843679 |
Target: 5'- gCCGUGCAGCAGCucGAGCcGGUCgugcagCCc -3' miRNA: 3'- gGGCAUGUCGUUG--CUCGuCUAGa-----GGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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