Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11036 | 5' | -52.7 | NC_002794.1 | + | 46647 | 0.76 | 0.654261 |
Target: 5'- gCCCGUGCAGCGAgGAaCAGcgCUCgCAg -3' miRNA: 3'- -GGGCAUGUCGUUgCUcGUCuaGAG-GU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 87347 | 0.66 | 0.984528 |
Target: 5'- cCCCagcagcggGUcCGGCGGCGAGCGGcgUUCUg -3' miRNA: 3'- -GGG--------CAuGUCGUUGCUCGUCuaGAGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 47760 | 0.66 | 0.984528 |
Target: 5'- gCCGUggucGCGGCAcaACGcGCAGGUCgagcggCCGc -3' miRNA: 3'- gGGCA----UGUCGU--UGCuCGUCUAGa-----GGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 194917 | 0.66 | 0.984528 |
Target: 5'- gCCG-ACAGCAGCGGccGCAccagCUCCGa -3' miRNA: 3'- gGGCaUGUCGUUGCU--CGUcua-GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 179874 | 0.66 | 0.984528 |
Target: 5'- gUCUGUcCGGCGACGGGUaauAGcacacGUCUCCGg -3' miRNA: 3'- -GGGCAuGUCGUUGCUCG---UC-----UAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 118330 | 0.67 | 0.982647 |
Target: 5'- -aCGgGCGGCGAgaaGAGCAGGUCgccCCAc -3' miRNA: 3'- ggGCaUGUCGUUg--CUCGUCUAGa--GGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 67879 | 0.67 | 0.982647 |
Target: 5'- uCCCGa--AGCucCGAGCGGA-CUCCc -3' miRNA: 3'- -GGGCaugUCGuuGCUCGUCUaGAGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 135915 | 0.67 | 0.98245 |
Target: 5'- gCCGUACGGguuGCGGGCcAGGUaacgagcCUCCAu -3' miRNA: 3'- gGGCAUGUCgu-UGCUCG-UCUA-------GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 185421 | 0.67 | 0.980599 |
Target: 5'- gCCGUcgacucgacGCGGCGccaugcGCGGaCAGGUCUCCGc -3' miRNA: 3'- gGGCA---------UGUCGU------UGCUcGUCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 65942 | 0.66 | 0.987821 |
Target: 5'- gUCGgcgGCGGUAucgucGCGAGCGGcggcGUCUCCu -3' miRNA: 3'- gGGCa--UGUCGU-----UGCUCGUC----UAGAGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 107343 | 0.66 | 0.98625 |
Target: 5'- gUCCGUGggucCGGUcgccGCGAGC-GAUCUCCu -3' miRNA: 3'- -GGGCAU----GUCGu---UGCUCGuCUAGAGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 121548 | 0.66 | 0.987821 |
Target: 5'- gCCCGgugACGacgaGACGAGCuucgGGAUCUUCAg -3' miRNA: 3'- -GGGCa--UGUcg--UUGCUCG----UCUAGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 91871 | 0.66 | 0.990543 |
Target: 5'- uCCCGggggugGCGGCGgcggccgcgACGAGCAGuUCacgCCGc -3' miRNA: 3'- -GGGCa-----UGUCGU---------UGCUCGUCuAGa--GGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 117380 | 0.66 | 0.990543 |
Target: 5'- gCCUGcACGgucGCGGCGaAGCGGGcCUCCAc -3' miRNA: 3'- -GGGCaUGU---CGUUGC-UCGUCUaGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 60072 | 0.66 | 0.989249 |
Target: 5'- aCCGUGCcGCcgccCGcGCAGGUgCUCCAc -3' miRNA: 3'- gGGCAUGuCGuu--GCuCGUCUA-GAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 36687 | 0.66 | 0.989249 |
Target: 5'- gCCGaagACGGUccGCGuGCAGAcCUCCAg -3' miRNA: 3'- gGGCa--UGUCGu-UGCuCGUCUaGAGGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 39722 | 0.66 | 0.987821 |
Target: 5'- aCCGcUGCAGCAucacgACGAGgAGAUCa--- -3' miRNA: 3'- gGGC-AUGUCGU-----UGCUCgUCUAGaggu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 99925 | 0.66 | 0.987821 |
Target: 5'- gCCGUGCGGCGugGucuuGCGGcuguUCggCCGg -3' miRNA: 3'- gGGCAUGUCGUugCu---CGUCu---AGa-GGU- -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 141811 | 0.66 | 0.987821 |
Target: 5'- cCUCGgACAGCcgguuggacgacGACGAGCGGAUCgCUc -3' miRNA: 3'- -GGGCaUGUCG------------UUGCUCGUCUAGaGGu -5' |
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11036 | 5' | -52.7 | NC_002794.1 | + | 339 | 0.66 | 0.987821 |
Target: 5'- gCCG-ACAGCccgcGCGAcgGCAGAUUUUCAc -3' miRNA: 3'- gGGCaUGUCGu---UGCU--CGUCUAGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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