miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11037 3' -61.4 NC_002794.1 + 148121 0.66 0.770984
Target:  5'- aCGGU--CGGUGUCGGGCGCg--GGg -3'
miRNA:   3'- aGCCGguGCCGCAGCCUGCGguaCCa -5'
11037 3' -61.4 NC_002794.1 + 44247 0.66 0.770984
Target:  5'- gCGGCUcggugccggGCGGC-UCGGcCGCCggGGa -3'
miRNA:   3'- aGCCGG---------UGCCGcAGCCuGCGGuaCCa -5'
11037 3' -61.4 NC_002794.1 + 50578 0.66 0.770984
Target:  5'- aCGGCgugCGCGGCGgcugGGugGCCGgcgccgGGg -3'
miRNA:   3'- aGCCG---GUGCCGCag--CCugCGGUa-----CCa -5'
11037 3' -61.4 NC_002794.1 + 56308 0.66 0.770984
Target:  5'- gCGGUCGCGGuCG-CuGGCGgCCGUGGc -3'
miRNA:   3'- aGCCGGUGCC-GCaGcCUGC-GGUACCa -5'
11037 3' -61.4 NC_002794.1 + 120050 0.66 0.770984
Target:  5'- aCGGCgGCGGUGgcggccgCGGAgGCCgacgcggcgGUGGc -3'
miRNA:   3'- aGCCGgUGCCGCa------GCCUgCGG---------UACCa -5'
11037 3' -61.4 NC_002794.1 + 95041 0.66 0.770984
Target:  5'- cCGGUgGCGGCGccCGaGGCGUaCGUGGa -3'
miRNA:   3'- aGCCGgUGCCGCa-GC-CUGCG-GUACCa -5'
11037 3' -61.4 NC_002794.1 + 34837 0.66 0.762067
Target:  5'- cCGGCgccggaGCGGgCGUCGGagcggGCGCCGcGGg -3'
miRNA:   3'- aGCCGg-----UGCC-GCAGCC-----UGCGGUaCCa -5'
11037 3' -61.4 NC_002794.1 + 126612 0.66 0.762067
Target:  5'- cCGGCgccgacguCGCGGCGUgagcgcgacCGGGCGCCcgGa- -3'
miRNA:   3'- aGCCG--------GUGCCGCA---------GCCUGCGGuaCca -5'
11037 3' -61.4 NC_002794.1 + 29214 0.66 0.762067
Target:  5'- gCGGUCgGCGGcCGUCGGcCGCCGa--- -3'
miRNA:   3'- aGCCGG-UGCC-GCAGCCuGCGGUacca -5'
11037 3' -61.4 NC_002794.1 + 14656 0.66 0.753049
Target:  5'- -gGcGCCGCGGCGUCGGuccgacuCGCgGcGGc -3'
miRNA:   3'- agC-CGGUGCCGCAGCCu------GCGgUaCCa -5'
11037 3' -61.4 NC_002794.1 + 114184 0.66 0.753049
Target:  5'- gUUGGCCA-GGCGcagCGG-CGCCAcGGc -3'
miRNA:   3'- -AGCCGGUgCCGCa--GCCuGCGGUaCCa -5'
11037 3' -61.4 NC_002794.1 + 116085 0.66 0.753049
Target:  5'- cUCGG-CGCGGCgGUCGu-CGCCggGGUc -3'
miRNA:   3'- -AGCCgGUGCCG-CAGCcuGCGGuaCCA- -5'
11037 3' -61.4 NC_002794.1 + 145528 0.66 0.753049
Target:  5'- cCGGCC-CGaGCGccUCGGGCGCCccGa- -3'
miRNA:   3'- aGCCGGuGC-CGC--AGCCUGCGGuaCca -5'
11037 3' -61.4 NC_002794.1 + 117465 0.66 0.753049
Target:  5'- --cGCCGCGGuCGUCGG-CGUacuCGUGGa -3'
miRNA:   3'- agcCGGUGCC-GCAGCCuGCG---GUACCa -5'
11037 3' -61.4 NC_002794.1 + 100455 0.66 0.747591
Target:  5'- gCGGCgGCGGCGccuuccCGGugGCggagaaccuggacgaCGUGGUc -3'
miRNA:   3'- aGCCGgUGCCGCa-----GCCugCG---------------GUACCA- -5'
11037 3' -61.4 NC_002794.1 + 19463 0.66 0.743935
Target:  5'- gCGGCgGCGGCGgCGGGaccCGCC--GGUc -3'
miRNA:   3'- aGCCGgUGCCGCaGCCU---GCGGuaCCA- -5'
11037 3' -61.4 NC_002794.1 + 116427 0.66 0.743935
Target:  5'- -aGGgCGCGG-GUCaGGACGCCGacGGUg -3'
miRNA:   3'- agCCgGUGCCgCAG-CCUGCGGUa-CCA- -5'
11037 3' -61.4 NC_002794.1 + 40406 0.66 0.738424
Target:  5'- uUCGGUCGCGGgGUCGGccgGCGaCUcugcagaucucgguaGUGGg -3'
miRNA:   3'- -AGCCGGUGCCgCAGCC---UGC-GG---------------UACCa -5'
11037 3' -61.4 NC_002794.1 + 127278 0.66 0.738424
Target:  5'- aCGGUCACGGUGaCGGuggaaccuccgaccuACGCCGaGGc -3'
miRNA:   3'- aGCCGGUGCCGCaGCC---------------UGCGGUaCCa -5'
11037 3' -61.4 NC_002794.1 + 71226 0.66 0.734734
Target:  5'- cCGGCCGCGuaGUggCGGcCGgCGUGGa -3'
miRNA:   3'- aGCCGGUGCcgCA--GCCuGCgGUACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.