miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11038 3' -54.6 NC_002794.1 + 76987 0.74 0.681101
Target:  5'- aCCUgGUCCUGUcgaCCACCGUCAccgGGAUg- -3'
miRNA:   3'- -GGAgCAGGGCA---GGUGGCAGU---UCUAgc -5'
11038 3' -54.6 NC_002794.1 + 52364 0.74 0.710423
Target:  5'- aCUCGUCUCcUUCACCaUCAAGAUCa -3'
miRNA:   3'- gGAGCAGGGcAGGUGGcAGUUCUAGc -5'
11038 3' -54.6 NC_002794.1 + 7983 0.73 0.747664
Target:  5'- gCCUCGucccccaUCCCGUCC-CCGUCcucGGUCa -3'
miRNA:   3'- -GGAGC-------AGGGCAGGuGGCAGuu-CUAGc -5'
11038 3' -54.6 NC_002794.1 + 8229 0.71 0.836154
Target:  5'- cCCUCGUCCuCGUCC-UCGUCcucGUCGu -3'
miRNA:   3'- -GGAGCAGG-GCAGGuGGCAGuucUAGC- -5'
11038 3' -54.6 NC_002794.1 + 148003 0.71 0.836154
Target:  5'- cCUUCGUCCgCGUCgGCCucgGUCGguuGAUCGg -3'
miRNA:   3'- -GGAGCAGG-GCAGgUGG---CAGUu--CUAGC- -5'
11038 3' -54.6 NC_002794.1 + 105745 0.71 0.84407
Target:  5'- gCgUCGUCgCCGUCguCGCCGuucaUCGGGGUCGg -3'
miRNA:   3'- -GgAGCAG-GGCAG--GUGGC----AGUUCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 46985 0.71 0.84407
Target:  5'- uCCUCGUCCC--CCGCCGgcacggCAAGA-CGu -3'
miRNA:   3'- -GGAGCAGGGcaGGUGGCa-----GUUCUaGC- -5'
11038 3' -54.6 NC_002794.1 + 91843 0.71 0.84407
Target:  5'- --aCG-CCUGUCgCACCGUCAAGuUCGa -3'
miRNA:   3'- ggaGCaGGGCAG-GUGGCAGUUCuAGC- -5'
11038 3' -54.6 NC_002794.1 + 113222 0.71 0.851804
Target:  5'- uCCUcCG-CCCGggcgaCCGCCGUcCAGGAUCu -3'
miRNA:   3'- -GGA-GCaGGGCa----GGUGGCA-GUUCUAGc -5'
11038 3' -54.6 NC_002794.1 + 154271 0.7 0.880123
Target:  5'- gUCUgGUCCCGaCCGCCGgcgcggcUCGAcGGUCGa -3'
miRNA:   3'- -GGAgCAGGGCaGGUGGC-------AGUU-CUAGC- -5'
11038 3' -54.6 NC_002794.1 + 65161 0.7 0.880809
Target:  5'- --cCGUCCCGUCCguggcgccgagACCGgcgggugccggCGAGGUCGg -3'
miRNA:   3'- ggaGCAGGGCAGG-----------UGGCa----------GUUCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 30136 0.7 0.880809
Target:  5'- cCCcCGUCCCGacCCACCGgcggUCAgaAGAUCa -3'
miRNA:   3'- -GGaGCAGGGCa-GGUGGC----AGU--UCUAGc -5'
11038 3' -54.6 NC_002794.1 + 178000 0.7 0.880809
Target:  5'- gUCUgGUUCCGUCUgcagcGCuCGUCGGGGUCa -3'
miRNA:   3'- -GGAgCAGGGCAGG-----UG-GCAGUUCUAGc -5'
11038 3' -54.6 NC_002794.1 + 156687 0.7 0.880809
Target:  5'- aCUCG-CCCGUcuucucggccgCCGCCGUCccaccGAUCGg -3'
miRNA:   3'- gGAGCaGGGCA-----------GGUGGCAGuu---CUAGC- -5'
11038 3' -54.6 NC_002794.1 + 89569 0.7 0.88555
Target:  5'- gCCgagCGUCCCGgugucaUCgGCCGUCGagccgcgcgaucccGGGUCGg -3'
miRNA:   3'- -GGa--GCAGGGC------AGgUGGCAGU--------------UCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 93917 0.7 0.894081
Target:  5'- gCCUag-CCgCGUCCAUCGUCGgcaAGAUCa -3'
miRNA:   3'- -GGAgcaGG-GCAGGUGGCAGU---UCUAGc -5'
11038 3' -54.6 NC_002794.1 + 63051 0.69 0.906489
Target:  5'- aCCUC-UCaCCGUCCACCGcggCGAGcUCc -3'
miRNA:   3'- -GGAGcAG-GGCAGGUGGCa--GUUCuAGc -5'
11038 3' -54.6 NC_002794.1 + 42272 0.69 0.912363
Target:  5'- cCCUCGcCCCG-CCGCCGcuccUCGuuGAUCu -3'
miRNA:   3'- -GGAGCaGGGCaGGUGGC----AGUu-CUAGc -5'
11038 3' -54.6 NC_002794.1 + 114329 0.69 0.917458
Target:  5'- uCCUCGuagUCCCGccgcagcggcucgUCCGCCGcCAGGGcCGg -3'
miRNA:   3'- -GGAGC---AGGGC-------------AGGUGGCaGUUCUaGC- -5'
11038 3' -54.6 NC_002794.1 + 188327 0.69 0.918013
Target:  5'- uCCUCGUCgCCG-CCGCCGgcggCGccGUCGc -3'
miRNA:   3'- -GGAGCAG-GGCaGGUGGCa---GUucUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.