miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11038 3' -54.6 NC_002794.1 + 187563 0.67 0.95515
Target:  5'- gCCgUCGggCCCGUacCCGCCGUC-GGcgCGg -3'
miRNA:   3'- -GG-AGCa-GGGCA--GGUGGCAGuUCuaGC- -5'
11038 3' -54.6 NC_002794.1 + 20861 0.68 0.951282
Target:  5'- gCUCGUgccaCCCGUCC-CCG-CGAGucacGUCGa -3'
miRNA:   3'- gGAGCA----GGGCAGGuGGCaGUUC----UAGC- -5'
11038 3' -54.6 NC_002794.1 + 188219 0.68 0.942893
Target:  5'- uCCUCGUCgUCGUCguCAUCGUCGucGUCGa -3'
miRNA:   3'- -GGAGCAG-GGCAG--GUGGCAGUucUAGC- -5'
11038 3' -54.6 NC_002794.1 + 42171 0.68 0.942893
Target:  5'- --aCGUCUCGUCCGucuCCGcCAcGAUCGg -3'
miRNA:   3'- ggaGCAGGGCAGGU---GGCaGUuCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 19354 0.68 0.942893
Target:  5'- cCCUCGccgCCCG-CC-CCGcCcGGAUCGg -3'
miRNA:   3'- -GGAGCa--GGGCaGGuGGCaGuUCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 78917 0.68 0.94245
Target:  5'- aCUcCGUCCCGUcgggcacCCGCCGcCGgcAGGUCa -3'
miRNA:   3'- gGA-GCAGGGCA-------GGUGGCaGU--UCUAGc -5'
11038 3' -54.6 NC_002794.1 + 88687 0.69 0.923439
Target:  5'- cCCgUCGcUCCgCGauacUCgACCGUCGGGGUCGa -3'
miRNA:   3'- -GG-AGC-AGG-GC----AGgUGGCAGUUCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 71823 0.69 0.923439
Target:  5'- gCCUCGUCgcgaggaucgCCGUCC-CCGUCGacgGGAccUCa -3'
miRNA:   3'- -GGAGCAG----------GGCAGGuGGCAGU---UCU--AGc -5'
11038 3' -54.6 NC_002794.1 + 133372 0.69 0.918013
Target:  5'- gCUCGUCggucgUCGUCCgGCgGUCAuGAUCGg -3'
miRNA:   3'- gGAGCAG-----GGCAGG-UGgCAGUuCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 188327 0.69 0.918013
Target:  5'- uCCUCGUCgCCG-CCGCCGgcggCGccGUCGc -3'
miRNA:   3'- -GGAGCAG-GGCaGGUGGCa---GUucUAGC- -5'
11038 3' -54.6 NC_002794.1 + 114329 0.69 0.917458
Target:  5'- uCCUCGuagUCCCGccgcagcggcucgUCCGCCGcCAGGGcCGg -3'
miRNA:   3'- -GGAGC---AGGGC-------------AGGUGGCaGUUCUaGC- -5'
11038 3' -54.6 NC_002794.1 + 42272 0.69 0.912363
Target:  5'- cCCUCGcCCCG-CCGCCGcuccUCGuuGAUCu -3'
miRNA:   3'- -GGAGCaGGGCaGGUGGC----AGUu-CUAGc -5'
11038 3' -54.6 NC_002794.1 + 63051 0.69 0.906489
Target:  5'- aCCUC-UCaCCGUCCACCGcggCGAGcUCc -3'
miRNA:   3'- -GGAGcAG-GGCAGGUGGCa--GUUCuAGc -5'
11038 3' -54.6 NC_002794.1 + 93917 0.7 0.894081
Target:  5'- gCCUag-CCgCGUCCAUCGUCGgcaAGAUCa -3'
miRNA:   3'- -GGAgcaGG-GCAGGUGGCAGU---UCUAGc -5'
11038 3' -54.6 NC_002794.1 + 89569 0.7 0.88555
Target:  5'- gCCgagCGUCCCGgugucaUCgGCCGUCGagccgcgcgaucccGGGUCGg -3'
miRNA:   3'- -GGa--GCAGGGC------AGgUGGCAGU--------------UCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 156687 0.7 0.880809
Target:  5'- aCUCG-CCCGUcuucucggccgCCGCCGUCccaccGAUCGg -3'
miRNA:   3'- gGAGCaGGGCA-----------GGUGGCAGuu---CUAGC- -5'
11038 3' -54.6 NC_002794.1 + 65161 0.7 0.880809
Target:  5'- --cCGUCCCGUCCguggcgccgagACCGgcgggugccggCGAGGUCGg -3'
miRNA:   3'- ggaGCAGGGCAGG-----------UGGCa----------GUUCUAGC- -5'
11038 3' -54.6 NC_002794.1 + 30136 0.7 0.880809
Target:  5'- cCCcCGUCCCGacCCACCGgcggUCAgaAGAUCa -3'
miRNA:   3'- -GGaGCAGGGCa-GGUGGC----AGU--UCUAGc -5'
11038 3' -54.6 NC_002794.1 + 178000 0.7 0.880809
Target:  5'- gUCUgGUUCCGUCUgcagcGCuCGUCGGGGUCa -3'
miRNA:   3'- -GGAgCAGGGCAGG-----UG-GCAGUUCUAGc -5'
11038 3' -54.6 NC_002794.1 + 154271 0.7 0.880123
Target:  5'- gUCUgGUCCCGaCCGCCGgcgcggcUCGAcGGUCGa -3'
miRNA:   3'- -GGAgCAGGGCaGGUGGC-------AGUU-CUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.