Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11038 | 5' | -51 | NC_002794.1 | + | 60613 | 0.66 | 0.996234 |
Target: 5'- aGCAACaGCAGAaccGGACGGGc-GGACc -3' miRNA: 3'- aCGUUG-CGUUUca-CCUGCUCuaCCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 110170 | 0.66 | 0.995593 |
Target: 5'- cGCGGgGCAuGAGgcu-CGAGAUGGGCc -3' miRNA: 3'- aCGUUgCGU-UUCaccuGCUCUACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 142182 | 0.66 | 0.995593 |
Target: 5'- gGCAGCGCGAGGagcGGcaguGCGGGAaGcGGCg -3' miRNA: 3'- aCGUUGCGUUUCa--CC----UGCUCUaC-CUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 126705 | 0.66 | 0.995593 |
Target: 5'- gGCGcCGCGGAcucgGGGCGAGggGGGu -3' miRNA: 3'- aCGUuGCGUUUca--CCUGCUCuaCCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 110499 | 0.66 | 0.995593 |
Target: 5'- gGCGGCGCcuggagAAAGUcGGuCGAGAUcGGCg -3' miRNA: 3'- aCGUUGCG------UUUCA-CCuGCUCUAcCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 91038 | 0.66 | 0.996234 |
Target: 5'- gGCGGCccuCGGGGUGGACGGGgcGcGCg -3' miRNA: 3'- aCGUUGc--GUUUCACCUGCUCuaCcUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 153518 | 0.66 | 0.996234 |
Target: 5'- -cCGGCGCuauuGGUcGGGaGAGGUGGGCg -3' miRNA: 3'- acGUUGCGuu--UCA-CCUgCUCUACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 108335 | 0.67 | 0.988229 |
Target: 5'- gGCGGCGCA----GGAgGAGGUGG-Cg -3' miRNA: 3'- aCGUUGCGUuucaCCUgCUCUACCuG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 80576 | 0.67 | 0.98965 |
Target: 5'- gUGcCGACGCAcGGgcugacGGACGAGAaccugacGGACg -3' miRNA: 3'- -AC-GUUGCGUuUCa-----CCUGCUCUa------CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 143306 | 0.67 | 0.988229 |
Target: 5'- gUGCAGCGC------GGCGGGAUGGAa -3' miRNA: 3'- -ACGUUGCGuuucacCUGCUCUACCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 138963 | 0.67 | 0.988229 |
Target: 5'- cUGCGACGC--GGcGGACGGGuUGGcCu -3' miRNA: 3'- -ACGUUGCGuuUCaCCUGCUCuACCuG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 139991 | 0.67 | 0.98965 |
Target: 5'- cGCGACGCg----GGACGgugcGGGUGGAg -3' miRNA: 3'- aCGUUGCGuuucaCCUGC----UCUACCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 100460 | 0.67 | 0.990933 |
Target: 5'- gGCGGCGCcuucccGGUGG-CGgAGAaccUGGACg -3' miRNA: 3'- aCGUUGCGuu----UCACCuGC-UCU---ACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 64696 | 0.67 | 0.992087 |
Target: 5'- gGCGAgGCGAGcGcGGACGAGGacGACg -3' miRNA: 3'- aCGUUgCGUUU-CaCCUGCUCUacCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 107547 | 0.67 | 0.990933 |
Target: 5'- gGCGGCGaCGAccgcGGUGGGgGAGGaGGAg -3' miRNA: 3'- aCGUUGC-GUU----UCACCUgCUCUaCCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 33212 | 0.67 | 0.993122 |
Target: 5'- gUGCGACGguGcggcaGGUcucGGACGAG-UGGAa -3' miRNA: 3'- -ACGUUGCguU-----UCA---CCUGCUCuACCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 136124 | 0.67 | 0.993122 |
Target: 5'- gGCGG-GCGAAGUcgaagaggaGGGCGAGGacggGGGCg -3' miRNA: 3'- aCGUUgCGUUUCA---------CCUGCUCUa---CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 53620 | 0.67 | 0.993122 |
Target: 5'- cGCAGCGuCGGAc-GGACGAGGUcGGCc -3' miRNA: 3'- aCGUUGC-GUUUcaCCUGCUCUAcCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 36975 | 0.67 | 0.993122 |
Target: 5'- cGCAggaggaucGCGCGcAGGUcGGCGAGgcGGACc -3' miRNA: 3'- aCGU--------UGCGU-UUCAcCUGCUCuaCCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 142579 | 0.68 | 0.986661 |
Target: 5'- aGCAGCGCGA--UGGGCGcgcccuGggGGAUg -3' miRNA: 3'- aCGUUGCGUUucACCUGCu-----CuaCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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