miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11038 5' -51 NC_002794.1 + 144593 0.77 0.641953
Target:  5'- gGCGGCuaccugccccucaaGCAGacGGUGGAgGAGAUGGGCa -3'
miRNA:   3'- aCGUUG--------------CGUU--UCACCUgCUCUACCUG- -5'
11038 5' -51 NC_002794.1 + 177953 0.75 0.747959
Target:  5'- gGCGAgGUc-GGUGGACGGuGGUGGACg -3'
miRNA:   3'- aCGUUgCGuuUCACCUGCU-CUACCUG- -5'
11038 5' -51 NC_002794.1 + 94152 0.74 0.80517
Target:  5'- gGCGGCGCuggacGGUGGGgGGGAcggGGACg -3'
miRNA:   3'- aCGUUGCGuu---UCACCUgCUCUa--CCUG- -5'
11038 5' -51 NC_002794.1 + 176697 0.74 0.80517
Target:  5'- gUGCAAUGgGAaacGGUGGACGGGAccGACg -3'
miRNA:   3'- -ACGUUGCgUU---UCACCUGCUCUacCUG- -5'
11038 5' -51 NC_002794.1 + 142245 0.74 0.823021
Target:  5'- gGCGGCGguGAGacGGACGGGAUcGACg -3'
miRNA:   3'- aCGUUGCguUUCa-CCUGCUCUAcCUG- -5'
11038 5' -51 NC_002794.1 + 79352 0.72 0.898143
Target:  5'- cGCGGCGCAGAGccugucggacacgcUGGACGAGGcgcaGACc -3'
miRNA:   3'- aCGUUGCGUUUC--------------ACCUGCUCUac--CUG- -5'
11038 5' -51 NC_002794.1 + 13080 0.71 0.924415
Target:  5'- cGCGaccgGCGCGAAGUcccgggGGACGAGGUGcguucGGCg -3'
miRNA:   3'- aCGU----UGCGUUUCA------CCUGCUCUAC-----CUG- -5'
11038 5' -51 NC_002794.1 + 137874 0.71 0.924415
Target:  5'- gUGCGGCGUcuGGUGGGCGAugcccgccaGGACg -3'
miRNA:   3'- -ACGUUGCGuuUCACCUGCUcua------CCUG- -5'
11038 5' -51 NC_002794.1 + 61748 0.71 0.935056
Target:  5'- aGCccGCGCGAGGUGuGCGAGggGGGg -3'
miRNA:   3'- aCGu-UGCGUUUCACcUGCUCuaCCUg -5'
11038 5' -51 NC_002794.1 + 56037 0.71 0.935056
Target:  5'- cGCAGCgGCAGAagagcGUGGGC-AGGUGGAa -3'
miRNA:   3'- aCGUUG-CGUUU-----CACCUGcUCUACCUg -5'
11038 5' -51 NC_002794.1 + 115896 0.7 0.949141
Target:  5'- cGCGgaGCGCGGGG-GGuucgUGGGGUGGACu -3'
miRNA:   3'- aCGU--UGCGUUUCaCCu---GCUCUACCUG- -5'
11038 5' -51 NC_002794.1 + 92280 0.7 0.953344
Target:  5'- gGCGaggcGCGCAAGGUcgGcGACGAGGcgGGGCu -3'
miRNA:   3'- aCGU----UGCGUUUCA--C-CUGCUCUa-CCUG- -5'
11038 5' -51 NC_002794.1 + 144274 0.7 0.957307
Target:  5'- gGCGgucuucgacACGCucaagaacccGGUGGACGAGGaGGACg -3'
miRNA:   3'- aCGU---------UGCGuu--------UCACCUGCUCUaCCUG- -5'
11038 5' -51 NC_002794.1 + 146647 0.69 0.964528
Target:  5'- aGCGGCGaCGAAcacgagccguuGcUGGACGAGGaGGACg -3'
miRNA:   3'- aCGUUGC-GUUU-----------C-ACCUGCUCUaCCUG- -5'
11038 5' -51 NC_002794.1 + 138695 0.69 0.976314
Target:  5'- cGUGAUGCAAAuGaGGGCGGcGUGGACu -3'
miRNA:   3'- aCGUUGCGUUU-CaCCUGCUcUACCUG- -5'
11038 5' -51 NC_002794.1 + 180154 0.68 0.978747
Target:  5'- cGCAGCaGCAGu-UGGugGGGAuagccgUGGGCg -3'
miRNA:   3'- aCGUUG-CGUUucACCugCUCU------ACCUG- -5'
11038 5' -51 NC_002794.1 + 105914 0.68 0.981627
Target:  5'- gGCGGCGCuaccgccgccgccGGACGGGcUGGACg -3'
miRNA:   3'- aCGUUGCGuuuca--------CCUGCUCuACCUG- -5'
11038 5' -51 NC_002794.1 + 88061 0.68 0.981836
Target:  5'- cGCGcGCGCGAGG-GGGCGGGGccgcgguuugaacgGGGCg -3'
miRNA:   3'- aCGU-UGCGUUUCaCCUGCUCUa-------------CCUG- -5'
11038 5' -51 NC_002794.1 + 142579 0.68 0.986661
Target:  5'- aGCAGCGCGA--UGGGCGcgcccuGggGGAUg -3'
miRNA:   3'- aCGUUGCGUUucACCUGCu-----CuaCCUG- -5'
11038 5' -51 NC_002794.1 + 143306 0.67 0.988229
Target:  5'- gUGCAGCGC------GGCGGGAUGGAa -3'
miRNA:   3'- -ACGUUGCGuuucacCUGCUCUACCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.