Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11038 | 5' | -51 | NC_002794.1 | + | 88061 | 0.68 | 0.981836 |
Target: 5'- cGCGcGCGCGAGG-GGGCGGGGccgcgguuugaacgGGGCg -3' miRNA: 3'- aCGU-UGCGUUUCaCCUGCUCUa-------------CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 105914 | 0.68 | 0.981627 |
Target: 5'- gGCGGCGCuaccgccgccgccGGACGGGcUGGACg -3' miRNA: 3'- aCGUUGCGuuuca--------CCUGCUCuACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 180154 | 0.68 | 0.978747 |
Target: 5'- cGCAGCaGCAGu-UGGugGGGAuagccgUGGGCg -3' miRNA: 3'- aCGUUG-CGUUucACCugCUCU------ACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 138695 | 0.69 | 0.976314 |
Target: 5'- cGUGAUGCAAAuGaGGGCGGcGUGGACu -3' miRNA: 3'- aCGUUGCGUUU-CaCCUGCUcUACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 146647 | 0.69 | 0.964528 |
Target: 5'- aGCGGCGaCGAAcacgagccguuGcUGGACGAGGaGGACg -3' miRNA: 3'- aCGUUGC-GUUU-----------C-ACCUGCUCUaCCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 144274 | 0.7 | 0.957307 |
Target: 5'- gGCGgucuucgacACGCucaagaacccGGUGGACGAGGaGGACg -3' miRNA: 3'- aCGU---------UGCGuu--------UCACCUGCUCUaCCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 92280 | 0.7 | 0.953344 |
Target: 5'- gGCGaggcGCGCAAGGUcgGcGACGAGGcgGGGCu -3' miRNA: 3'- aCGU----UGCGUUUCA--C-CUGCUCUa-CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 115896 | 0.7 | 0.949141 |
Target: 5'- cGCGgaGCGCGGGG-GGuucgUGGGGUGGACu -3' miRNA: 3'- aCGU--UGCGUUUCaCCu---GCUCUACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 56037 | 0.71 | 0.935056 |
Target: 5'- cGCAGCgGCAGAagagcGUGGGC-AGGUGGAa -3' miRNA: 3'- aCGUUG-CGUUU-----CACCUGcUCUACCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 61748 | 0.71 | 0.935056 |
Target: 5'- aGCccGCGCGAGGUGuGCGAGggGGGg -3' miRNA: 3'- aCGu-UGCGUUUCACcUGCUCuaCCUg -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 13080 | 0.71 | 0.924415 |
Target: 5'- cGCGaccgGCGCGAAGUcccgggGGACGAGGUGcguucGGCg -3' miRNA: 3'- aCGU----UGCGUUUCA------CCUGCUCUAC-----CUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 137874 | 0.71 | 0.924415 |
Target: 5'- gUGCGGCGUcuGGUGGGCGAugcccgccaGGACg -3' miRNA: 3'- -ACGUUGCGuuUCACCUGCUcua------CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 79352 | 0.72 | 0.898143 |
Target: 5'- cGCGGCGCAGAGccugucggacacgcUGGACGAGGcgcaGACc -3' miRNA: 3'- aCGUUGCGUUUC--------------ACCUGCUCUac--CUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 142245 | 0.74 | 0.823021 |
Target: 5'- gGCGGCGguGAGacGGACGGGAUcGACg -3' miRNA: 3'- aCGUUGCguUUCa-CCUGCUCUAcCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 176697 | 0.74 | 0.80517 |
Target: 5'- gUGCAAUGgGAaacGGUGGACGGGAccGACg -3' miRNA: 3'- -ACGUUGCgUU---UCACCUGCUCUacCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 94152 | 0.74 | 0.80517 |
Target: 5'- gGCGGCGCuggacGGUGGGgGGGAcggGGACg -3' miRNA: 3'- aCGUUGCGuu---UCACCUgCUCUa--CCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 177953 | 0.75 | 0.747959 |
Target: 5'- gGCGAgGUc-GGUGGACGGuGGUGGACg -3' miRNA: 3'- aCGUUgCGuuUCACCUGCU-CUACCUG- -5' |
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11038 | 5' | -51 | NC_002794.1 | + | 144593 | 0.77 | 0.641953 |
Target: 5'- gGCGGCuaccugccccucaaGCAGacGGUGGAgGAGAUGGGCa -3' miRNA: 3'- aCGUUG--------------CGUU--UCACCUgCUCUACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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