miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11038 5' -51 NC_002794.1 + 13080 0.71 0.924415
Target:  5'- cGCGaccgGCGCGAAGUcccgggGGACGAGGUGcguucGGCg -3'
miRNA:   3'- aCGU----UGCGUUUCA------CCUGCUCUAC-----CUG- -5'
11038 5' -51 NC_002794.1 + 33212 0.67 0.993122
Target:  5'- gUGCGACGguGcggcaGGUcucGGACGAG-UGGAa -3'
miRNA:   3'- -ACGUUGCguU-----UCA---CCUGCUCuACCUg -5'
11038 5' -51 NC_002794.1 + 36975 0.67 0.993122
Target:  5'- cGCAggaggaucGCGCGcAGGUcGGCGAGgcGGACc -3'
miRNA:   3'- aCGU--------UGCGU-UUCAcCUGCUCuaCCUG- -5'
11038 5' -51 NC_002794.1 + 53620 0.67 0.993122
Target:  5'- cGCAGCGuCGGAc-GGACGAGGUcGGCc -3'
miRNA:   3'- aCGUUGC-GUUUcaCCUGCUCUAcCUG- -5'
11038 5' -51 NC_002794.1 + 56037 0.71 0.935056
Target:  5'- cGCAGCgGCAGAagagcGUGGGC-AGGUGGAa -3'
miRNA:   3'- aCGUUG-CGUUU-----CACCUGcUCUACCUg -5'
11038 5' -51 NC_002794.1 + 60613 0.66 0.996234
Target:  5'- aGCAACaGCAGAaccGGACGGGc-GGACc -3'
miRNA:   3'- aCGUUG-CGUUUca-CCUGCUCuaCCUG- -5'
11038 5' -51 NC_002794.1 + 61748 0.71 0.935056
Target:  5'- aGCccGCGCGAGGUGuGCGAGggGGGg -3'
miRNA:   3'- aCGu-UGCGUUUCACcUGCUCuaCCUg -5'
11038 5' -51 NC_002794.1 + 64696 0.67 0.992087
Target:  5'- gGCGAgGCGAGcGcGGACGAGGacGACg -3'
miRNA:   3'- aCGUUgCGUUU-CaCCUGCUCUacCUG- -5'
11038 5' -51 NC_002794.1 + 79352 0.72 0.898143
Target:  5'- cGCGGCGCAGAGccugucggacacgcUGGACGAGGcgcaGACc -3'
miRNA:   3'- aCGUUGCGUUUC--------------ACCUGCUCUac--CUG- -5'
11038 5' -51 NC_002794.1 + 80576 0.67 0.98965
Target:  5'- gUGcCGACGCAcGGgcugacGGACGAGAaccugacGGACg -3'
miRNA:   3'- -AC-GUUGCGUuUCa-----CCUGCUCUa------CCUG- -5'
11038 5' -51 NC_002794.1 + 88061 0.68 0.981836
Target:  5'- cGCGcGCGCGAGG-GGGCGGGGccgcgguuugaacgGGGCg -3'
miRNA:   3'- aCGU-UGCGUUUCaCCUGCUCUa-------------CCUG- -5'
11038 5' -51 NC_002794.1 + 91038 0.66 0.996234
Target:  5'- gGCGGCccuCGGGGUGGACGGGgcGcGCg -3'
miRNA:   3'- aCGUUGc--GUUUCACCUGCUCuaCcUG- -5'
11038 5' -51 NC_002794.1 + 92280 0.7 0.953344
Target:  5'- gGCGaggcGCGCAAGGUcgGcGACGAGGcgGGGCu -3'
miRNA:   3'- aCGU----UGCGUUUCA--C-CUGCUCUa-CCUG- -5'
11038 5' -51 NC_002794.1 + 94152 0.74 0.80517
Target:  5'- gGCGGCGCuggacGGUGGGgGGGAcggGGACg -3'
miRNA:   3'- aCGUUGCGuu---UCACCUgCUCUa--CCUG- -5'
11038 5' -51 NC_002794.1 + 100460 0.67 0.990933
Target:  5'- gGCGGCGCcuucccGGUGG-CGgAGAaccUGGACg -3'
miRNA:   3'- aCGUUGCGuu----UCACCuGC-UCU---ACCUG- -5'
11038 5' -51 NC_002794.1 + 105914 0.68 0.981627
Target:  5'- gGCGGCGCuaccgccgccgccGGACGGGcUGGACg -3'
miRNA:   3'- aCGUUGCGuuuca--------CCUGCUCuACCUG- -5'
11038 5' -51 NC_002794.1 + 107547 0.67 0.990933
Target:  5'- gGCGGCGaCGAccgcGGUGGGgGAGGaGGAg -3'
miRNA:   3'- aCGUUGC-GUU----UCACCUgCUCUaCCUg -5'
11038 5' -51 NC_002794.1 + 108335 0.67 0.988229
Target:  5'- gGCGGCGCA----GGAgGAGGUGG-Cg -3'
miRNA:   3'- aCGUUGCGUuucaCCUgCUCUACCuG- -5'
11038 5' -51 NC_002794.1 + 110170 0.66 0.995593
Target:  5'- cGCGGgGCAuGAGgcu-CGAGAUGGGCc -3'
miRNA:   3'- aCGUUgCGU-UUCaccuGCUCUACCUG- -5'
11038 5' -51 NC_002794.1 + 110499 0.66 0.995593
Target:  5'- gGCGGCGCcuggagAAAGUcGGuCGAGAUcGGCg -3'
miRNA:   3'- aCGUUGCG------UUUCA-CCuGCUCUAcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.